Xate018916.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730482.1:12121816-12123920[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.4e-08 0.00011 22.6 0.0 2 40 15 54 14 56 0.89 2 3 4 1e+04 -2.8 0.1 24 29 351 356 350 357 0.86 3 3 2.9 7.4e+03 -2.4 0.2 1 9 390 398 390 398 0.90
Sequence Information
- Coding Sequence
- ATGGTTAGGAATTACAAAAGGGTGAAAGATAGCCAGGTTGATGAAAACTCTTTGGCTCCTGCAGTAAATGATGTGATAAGGGAAAAAAAATCTATTAGAGGCACTGCTGCAGAGTACGGTGTCAATCATAATACATTATTTAAAAGAGTTAAAagggtgaaaaatttgaatccACGGTTATTTGAAATAGATTCTGGAAATGAGAGTGATGACGGAATTACTTGCGCGAACCCTATGAAATATAAACATAGACAGGTTTTCTCAACtgatgaagaagaagaattaaAGAAGTACCTTTTACGTTCTTCTCGAATAAATTACGGCCTTACTTATACGCAAACCAGAAGTTTCGCTTATGAGTATGCTGAAAAACTTGGAAAGACTTATCCTGATAGTTGGAACGTCAATCAAGCAGCTGGAAAAGACTCGATGTATGGATACATGAAGCGACATCCTGAACTAAGCTTAAGAAAACCGGAAAATACGATTGTGGCAAGATTTAAGTTCGATGCTTCCAAAGTATATAATTTAGACGAAACTGGTGTCACTACTGTAATCCGAGCTCCAAAGGTTATAGCAGAAAAATCCAGAAGGCAAGTGGGTCAAATCGTTTCTGCAGAACGTGGAGAACTTGTGACATTCACTGCAATTATAAATGCCGCGGGAAATTCACTTCCTCCGGTTTTCATATTCCCTCGAGTCTGCTAtaaagataattttttgtatgaagGTCCTTCTGGAAGCTTAGGAATGTCTACAAAAACAGGATGGGTGACAGTTGAACTTTTCCCACAAGTTTTGAAACACATTCAATTCCACACAAACTGTTCCAAGGAAAAGCCAATTATGTTGCTGATGGATAACGATAATAGTCATTGTTCTTTGGCAGCAATAGAATTCGCAAAAAACTCTGGAATAGTGCTGCTATCCTTTCCTCCACATTGCTCACACAAGCTCCAGCCGTTGGACATTGGAGTATTTGGTCCATTTAAAAGTGCTTTAAAAGCAGCATTTAATGATTTCATGTTAACACATCCAGGAAAATTAATTAGCATTTATGACATACCGCAGCTGGCAAAGCAGGCATATGAAAGCGCTTTTACTATTAGAAATATAACGTCATCATTCCAAAAGCCTGGAATTTGGCCAATTAATAGACTAGACTTTACCGACGATGATTTTGCTGCGGCATTGGTAACAGATCGACCATTTACTGAAAATCTTGAAAGTAGCCCAATTGATGTCCCTCCAGAAAAAGGGATAGAAAGTAGCACGGTTAGCTTTCCCCAGCCATCTAATTCTGGTCAAGCTAATttGCCTGAGCCAAACAATATCCCAGGAACTTTGCGAACCAGAGGATACTACAAGTTCGATATTGATTTTACAAATTATAATATGCGATAA
- Protein Sequence
- MVRNYKRVKDSQVDENSLAPAVNDVIREKKSIRGTAAEYGVNHNTLFKRVKRVKNLNPRLFEIDSGNESDDGITCANPMKYKHRQVFSTDEEEELKKYLLRSSRINYGLTYTQTRSFAYEYAEKLGKTYPDSWNVNQAAGKDSMYGYMKRHPELSLRKPENTIVARFKFDASKVYNLDETGVTTVIRAPKVIAEKSRRQVGQIVSAERGELVTFTAIINAAGNSLPPVFIFPRVCYKDNFLYEGPSGSLGMSTKTGWVTVELFPQVLKHIQFHTNCSKEKPIMLLMDNDNSHCSLAAIEFAKNSGIVLLSFPPHCSHKLQPLDIGVFGPFKSALKAAFNDFMLTHPGKLISIYDIPQLAKQAYESAFTIRNITSSFQKPGIWPINRLDFTDDDFAAALVTDRPFTENLESSPIDVPPEKGIESSTVSFPQPSNSGQANLPEPNNIPGTLRTRGYYKFDIDFTNYNMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540264;
- 90% Identity
- iTF_01540264;
- 80% Identity
- -