Xate018917.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730482.1:12126218-12128323[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.7e-08 0.00012 22.6 0.0 2 40 15 54 14 56 0.89 2 3 4.3 1.1e+04 -2.9 0.1 24 29 373 378 373 379 0.84 3 3 3 7.7e+03 -2.4 0.2 1 9 412 420 412 420 0.90
Sequence Information
- Coding Sequence
- ATGGTTAGGAATTACAAAAGGGTGAAAGATAGCCAGGTTGATGAAAACTCTTTGGCTCCTGCAGTAAATGATGTGATAAGGGAAAAAAAATCTATTAGAGGCACTGCTGCAGAGTACGGTGTCAATCATAATACATTATTTAAAAGAGTTAAAagggtgaaaaatttgaatccACGGTTATTTGAAATAGATTCTGGAAATGAGAGTGATGACGGAATTACTTGCGCGAACCCTATGAAATATAAACATAGACAGGTTTTCTCAACtgatgaagaagaagaattaaAGAAGTACCTTTTACGTTCTTCTCGTATAAATTACGGCCTTACTTATACGCAAACCAGAAGTTTCGCTTATGAGTATGCTGAAAAACTTGGAAAGACTTATCCTGATAGTTGGAACGTCAATCAAGCAGCTGGAAAAGACTCGATGTATGGATACATGAAGCGACATCCTGAACTAAGCTTAAGAAAACCGGAAAATACGAGTTTGGCTAGAGCTACTGCTTTTAATACAACAAACGTGGCggaattttttaataactatCTTGAAGTTGTGGCAAGATTTAAGTTCGATGCTTCCAAAGTATATAATTTAGACGAAACTGGTGTCACTACTGTAATCCGAGCTCCAAAGGTTATAGCAGAAAAATCCAGAAGGCAAGTGGGTCAAATCGTTTCTGCAGAACGTGGAGAACTTGTGACATTCACTGCAATTATAAATGCCGCGGGAAATTCACTTCCTCCGGTTTTCATATTCCCTCGAGTCTGCTAtaaagataattttttgtatgaagGTCCTTCTGGAAGCTTAGGAATGTCTACAAAAACAGGATGGATGACAGTTGAACTTTTCCCACAAGTTTTGAAACACATTCAATTCCACACAAACTGTTCCAAGGAAAAGCCAATTATGTTGCTGATGGATAACGATAATAGTCATTGTTCTTTGGCAGCAATAGAATTCGCAAAAAACTCTGGAATAGTGCTGCTATCCTTTCCTCCACATTGCTCACACAAGCTCCAGCCGTTGGACATTGGAGTATTTGGTCCATTTAAAAGTGCTTTAAAAGCAGCATTTAATGATTTCATGTTAACACATCCAGGAAAATTAATTAGCATTTATGACATACCGCAGCTGGCAAAGCAGGCATATGAAAGCGCTTTTACTATTAGAAATATAACATCATCATTCCAAAAGCCTGGAATTTGGCCAATTAATAGACTAGACTTTACCGACGATGATTTTGCTGCGGCATTGGTAACAGATCGACCATTTACTGAAAATCTTGAAAGTAGCCCAATTGATGTCCCTCCAGAAAAAGGGATAGAAAGTAGCACGGTTAGCTTTCCCCAGCCATCTAATTCTGGTCAAGCTAATttGCCTGAGCCAAACAATATCCCAGGAACTTTGCGAACCAGAGGATACTACAAGTTCGATATTGATTTTACAAATTATAATATGCGATAA
- Protein Sequence
- MVRNYKRVKDSQVDENSLAPAVNDVIREKKSIRGTAAEYGVNHNTLFKRVKRVKNLNPRLFEIDSGNESDDGITCANPMKYKHRQVFSTDEEEELKKYLLRSSRINYGLTYTQTRSFAYEYAEKLGKTYPDSWNVNQAAGKDSMYGYMKRHPELSLRKPENTSLARATAFNTTNVAEFFNNYLEVVARFKFDASKVYNLDETGVTTVIRAPKVIAEKSRRQVGQIVSAERGELVTFTAIINAAGNSLPPVFIFPRVCYKDNFLYEGPSGSLGMSTKTGWMTVELFPQVLKHIQFHTNCSKEKPIMLLMDNDNSHCSLAAIEFAKNSGIVLLSFPPHCSHKLQPLDIGVFGPFKSALKAAFNDFMLTHPGKLISIYDIPQLAKQAYESAFTIRNITSSFQKPGIWPINRLDFTDDDFAAALVTDRPFTENLESSPIDVPPEKGIESSTVSFPQPSNSGQANLPEPNNIPGTLRTRGYYKFDIDFTNYNMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540265;
- 90% Identity
- iTF_01540265;
- 80% Identity
- -