Xvio002035.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- nfxl1
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000004.1:29653510-29656228[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 1.1e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 18 2 2e+04 -4.2 0.9 4 10 161 167 161 167 0.72 3 18 5.5e-08 0.00056 20.0 15.1 1 18 175 191 175 192 0.98 4 18 1.8e-07 0.0018 18.4 13.1 1 19 229 246 229 246 0.93 5 18 9.2e-06 0.093 12.9 9.6 1 19 281 300 275 300 0.89 6 18 2.9e-05 0.29 11.4 8.4 1 18 336 353 336 354 0.97 7 18 0.0068 69 3.8 7.6 1 12 388 399 388 399 0.94 8 18 1.8 1.9e+04 -4.0 1.3 6 10 409 413 409 413 0.96 9 18 7.9e-08 0.0008 19.5 12.5 1 18 419 436 419 437 0.92 10 18 1.7 1.7e+04 -3.9 1.3 6 10 466 470 465 470 0.76 11 18 0.00012 1.3 9.3 7.7 9 19 485 495 483 495 0.90 12 18 0.0073 74 3.7 5.2 3 12 506 515 498 515 0.77 13 18 0.85 8.6e+03 -2.9 5.8 14 18 547 551 547 552 0.89 14 18 4.3e-05 0.44 10.8 5.3 1 12 588 599 582 599 0.91 15 18 0.61 6.1e+03 -2.5 1.0 6 10 615 619 614 619 0.88 16 18 0.005 50 4.2 16.4 4 19 629 644 627 644 0.91 17 18 0.65 6.6e+03 -2.6 0.2 3 7 659 663 653 665 0.60 18 18 6.4e-05 0.64 10.3 10.2 1 16 689 703 689 709 0.91
Sequence Information
- Coding Sequence
- ATGCAGAAATTTAGACAAGCTCAAGCTGAAAATAAAAGAGCAATTAACAAATATTTGGAAGCAAATGCCTATTTGGAATCATCGAGTGAGGATGAAGAGGATAAAAATGAAGAAGATATACAGAATGTGGTTGGAAAAGTATTATCTGCCTACCGAGGAAAAGAGGCGGATGCAGAAAAAATTTTGTCATATTTAATTAACACTTTTCAATCTGGTAATGCTGTTTGTCTTATATGCATTTCAACAGTAAAAAAAACTGATGCAatttGGAACTGTAGTAAATGTTTTGCTTTTTTGCACCTGTCGTGTATTTTACACTGGATACAAGATAGCTTGAATGTTAAACGTGAGAAAGGTGTAGCACTAATTTGGGCATGTCCAAAATGTCGTATGGAATATGGGCAACATGAAATTCCACGAAATTATAAATGCTTCTGCAAAAAGCTCACTGATCCAACATATCATCCATGGAATATTCCACATTCTTGTGGAGGAACATGTGGCAAACCTCTACAACCAGAGTGTGGTCATAAGTGTGTTCTACTTTGCCACCCTGGACCATGTCCTCCTTGTGCAAGAACAATATCTATCCAATGCTATTGTGGCAGAGAAATGCCGCAACGACGATGGTGCAATGCCAAAGAATGGAGTTGCGGTGCCAcatgtaataaaaaatataaactATGTTCACATGTTTGTAAAGAAATATGCCATTCAGGAGAATGTCCACCTTGTTCTGAAGTCTTACTTTTGAAATGTCATTGTAAGAGTAACGAAGAACTAAAGAAATGCTCTGAAGGCATGTGGGTTTGCAATAAACCTTGTGGTAGACTGTTATCTTGTAATGTTCATACATGCCAAAGTACATGTCATTTAATCGGCGATTGTGGAATCTGTCCATTAGAAAAAAATAGAACGTGTCCATGTGGGAAGAAGCGCTATGCTATTTCTTGCAAACAGGAACAATTACCTACTTGTGGTGACACGTGTGGTAAATTGTTAGATTGCGGATCACACTATTGTAATATGAGATGTCATGCTGATCGGTGTGGGCAATGTTTGGAGGTAGTAACAAAATCATGTAGATGTGGCAGCTATCAAAAAGAGATTGCATGTGGCAAAGAGTTTCATTGCAATAAGAAATGTACGCAAATGCGTTTGTGTGGGAGACATTTGTGTAATAAAAAATGCTGCGATTGTTTGATCAAGAGTACGTATAATATCTGTGAGAAAATATGCGACAATACTCTAAATTGTCGTAAACACAAATGTTCTGCTCCTTGTCATAGTGGACCATGTTATCCATGCGCACGAACAGATGTTATTCAGTGTAGATGTGGATATAATAAAATTAGAGTACCATGTGGTATAGTAAAAAAAATAAAACCACCACCTTGTAACAAACCATGTAAGGTGCCGCCGATTTGTCACCATCCGAAAAGAGAAACTCACAAATGTCATCAAGGTGCTTGTCCACCCTGCAAAAAGATTTGTGGCTTAGTGTATAAACGATGCAATCATTCTTGTGTTGCTGTTTGTCATACTAAAGTTTGGGTGAAAGTGAATAAAAATGACGTAAAAGCACAACCAGCTGGACCATGGGATATACAAAAAGAAGTCAAACAGCTCAAAACTTTACCGTGTCCACCATGTGAAGTTTCAGTACCAGTTACGTGTTTAGGAGGACACGAGACACGTCCGTGGCCTTGTCATATGGCCAAGCCTACGTCTTGTGGAAGACCATGTGGAAAAATGTTACCATGCACGAATCATACATGCGAATTGGTCTGCCACAAAATACCATCATCTGCAGAAGATAAAAATGGTACTCCCTGTATGGACTGTGAAAAACCATGCCTATTTCCACGACCGCAAGGTTGTACGCATTTGTGCCCAAAACCTTGTCATCCAGCACCATGCAGCCCTTGCAAGCAATTGGTTAAAATTTCATGTCATTGTGGTATAAGTACTTTATATCATAGATGCTTTCAATTAACATCAGCTAAAACTGAACAACGTAATGAATTGCTTAAATGTGGAAACCAATGCCccaaaaatTATCCTTGTGGACATCGGTGCATGAATAACTGCCATCCAGGTCTGTGTACAAATGAAGAAAAATGCAACAAAAGGGTGAAGCTATTCTGCGCATGCAAACGTATTAAGAAAGATTTCATCTGTTTCGAAATGCAGAAAGTAGAAATTCATATAGAATGCGATgatatttgtgataaattaaagCATGAAAAACGCCTAGCTGAAGCCGCGTTTTTGGAACAGAAAAGACAGGCGGAAGAATTACGTAATCAGCAGGAAATTGAAAAGTTTGAACGAAAATTTAAGCCCCGTCGTAAAGGAAAAGATAAGTTTGATAAAAGACAATTACACAGAGAAACGTGTAATAATTAtagaaaatattatattttagcccttttaatatgtttggtaggtattgttatattttacctgagtggttaa
- Protein Sequence
- MQKFRQAQAENKRAINKYLEANAYLESSSEDEEDKNEEDIQNVVGKVLSAYRGKEADAEKILSYLINTFQSGNAVCLICISTVKKTDAIWNCSKCFAFLHLSCILHWIQDSLNVKREKGVALIWACPKCRMEYGQHEIPRNYKCFCKKLTDPTYHPWNIPHSCGGTCGKPLQPECGHKCVLLCHPGPCPPCARTISIQCYCGREMPQRRWCNAKEWSCGATCNKKYKLCSHVCKEICHSGECPPCSEVLLLKCHCKSNEELKKCSEGMWVCNKPCGRLLSCNVHTCQSTCHLIGDCGICPLEKNRTCPCGKKRYAISCKQEQLPTCGDTCGKLLDCGSHYCNMRCHADRCGQCLEVVTKSCRCGSYQKEIACGKEFHCNKKCTQMRLCGRHLCNKKCCDCLIKSTYNICEKICDNTLNCRKHKCSAPCHSGPCYPCARTDVIQCRCGYNKIRVPCGIVKKIKPPPCNKPCKVPPICHHPKRETHKCHQGACPPCKKICGLVYKRCNHSCVAVCHTKVWVKVNKNDVKAQPAGPWDIQKEVKQLKTLPCPPCEVSVPVTCLGGHETRPWPCHMAKPTSCGRPCGKMLPCTNHTCELVCHKIPSSAEDKNGTPCMDCEKPCLFPRPQGCTHLCPKPCHPAPCSPCKQLVKISCHCGISTLYHRCFQLTSAKTEQRNELLKCGNQCPKNYPCGHRCMNNCHPGLCTNEEKCNKRVKLFCACKRIKKDFICFEMQKVEIHIECDDICDKLKHEKRLAEAAFLEQKRQAEELRNQQEIEKFERKFKPRRKGKDKFDKRQLHRETCNNYRKYYILALLICLVGIVIFYLSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00217442;
- 90% Identity
- -
- 80% Identity
- -