Xvio012605.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylocopa violacea
Gene Symbol
ush
Assembly
GCA_963969225.1
Location
CAXAJV010000019.1:14476909-14485328[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0065 0.53 11.0 0.0 3 20 353 370 351 372 0.92
2 8 4.8e-05 0.0039 17.7 1.3 1 23 402 424 402 424 0.98
3 8 0.11 8.9 7.2 1.6 3 20 463 480 462 482 0.93
4 8 0.017 1.3 9.7 4.4 2 21 698 717 697 718 0.94
5 8 0.077 6.2 7.6 0.0 3 20 746 763 744 765 0.91
6 8 0.006 0.49 11.1 0.0 2 23 804 825 803 825 0.95
7 8 0.024 2 9.2 1.5 1 23 831 853 831 853 0.98
8 8 0.11 8.7 7.2 0.5 3 21 948 966 947 967 0.92

Sequence Information

Coding Sequence
ATGCATCTCTCCTGGCATGGGTCGTGGCCCCGTGAAAACAGGGCGCACACTACCAGTGGAAAGAAGGAACGagacgaggaggaggaggaggaggaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcggagagGACTCACTCAGGCCTCACCAACCAGCCCTGCCTGTTACCTGTACGTCGCGTGTTTGCCTACCCGTGTCACGATCAGGATCCTATTTGCATAGCGCCGATGAAGCTGCTACCGTTGCGCTCGTTTTCCTGCCGCTCGGTGCACCCTTGCCTCCCTCCCACGGGGGAGGATGAGGAATGGAGCGACTCGGACAAGACACCTTCGGTGAGCAGTGGCGTGGACGGCGGTGGATCGGCGGTCTCCAGCCCGATCGCGCCGGTTGGCGAGGAGGAATCGAGCCTTCCTCCACCGCCAAGACTGAATCCTCCTTCCACGACGGTCGCGATCGTGAATTCGGCCACTGAGGATATCAAATTAAGGCTCAGCGTGCTCTCCGAAGACGCTCGGAAACGGCTGGCTAGTCTTACCGAAGATATCGAGGTTGCGAGAAACTTGAGAAATCGACATGCCACACCCAGGACTAATCAGACGCGAGAATCAAGCCCTAAAGACACCGACGAGGAGTCCAGTATGGTCCTGGTCAAGGAGGAAGACTGTCAGCCGAGAtcgtcgtcgtcttcgtcgTCCTCGACCAGAAGACGGGAGTCCGTCTGCAGGAGGGACTCGGAGGACTCCTCGAGGCGGTCGAACACGGACGAGCCACCACCGTCCGAGAAGAAGCTGAAACTCGACGACGAAGCAACACCAAGACTGAGACTCAATACTAGTCTGGCGACGGATCCAGCGCTACGACCCGCCGCCGTAGCCGCCCTCACCGTCAAACCGGAGAATACCTCGCCGCCGAATCCTGTGCCAGCCCTTCCGGCTGGACTTCAGAATGCGATCGCATCCGGTCGGCTGTTCGTGCTGCCAACCGACGGCAAGGAGACGATCACCGTGGAGCCAGCCAGGCCGGCGCCGTTGATCTGCCCGCCGTGCGGCATCCGCTTCAGCTCGGCCAGCACGCTGGAGGCGCATCGCACCTTCTACTGCGCCCATCGGCCCCGTCTCGAGGAGGAGACGGCGaacgaggaggacgaggagaaGTCGAACAAGTTCGAGGTGAGGAAGGCGTACGCCTGTCCCCACTGCTCGTACAGCGCGGACAAGAAGGTCTCGTTGAACAGACACATGAGGATGCACGCCGCGTCCCCGGCGCCGCCGACGATACCAACGGCCCCGACCACGGCCACCACCCCCGGAAGCGGCGCAGCGACCGCCTCGAACGGCTCCCTGAACGAGGAGGCCGAGAGATACTGCAGGAACTGCGACATCCGGTTCAGCTCCCTGAAAACGTACCGGGCCCACAAGACGCACTACTGCAGCACGAGGCACGTGGTCAAAGACACGCCACCAGCGGCCGCCACGGTGGCCTCCTCGTCGGTGAAGGCGTCGCCGCCGACGAGCGCCAGCCCCGGGGAATCGCCGCCGCCGCAACCCTGCCTGGCGCTGCCCACGAACCCGATCCTGATCGTGCCCTACTCTCTGTTCCGCGGGGCCAGCGTCCTGGCGGCACCGACTCTGCCCGCGCCCGACACTGCGTGCTTCCTTCTTCCGAACGGCCATCTTCAACCGATGACAAGAGGCCTCGCTACCACGCCGCAGAACACAGTGGTCGAACCGTCGCCGGTTCTTCGAGCGGTGAACAAACCGACGACGCCAGCGTCCGTCGTGGCGTCGTCCACGTCGCCAACCGGCTCCGCGCCGCTCGATCTAAGCGTCAGGAAGTCACCTGCGCACCAGGACGAGAAGGAGAACAGGGTGTCGCCAGCGCCCTCGTCTCTGCCTCCGCCGCCTGGCAGTCCTAGATCCAGAGGAAGCGGAAGTCCTAGAGCGAGGTCGATCGGCTCTGTCCCGGCAGCTGGAGTCGTAGCGGCACCACCGCCGACGGAACTCGCTCTGCGACTGGCCGAGCTTCCTCCACCGCCTGTTCCTGGTGTCCTCGTCAAGCAGGGTGTGTCGAGATGCAAGGAGTGCAACATCGTGTTCTGCCGACACGAGAACTTCGTCGCGCACAAGAAGCACTACTGTCAAGCCAGAGAGACGTCGGTCAGCAACAGTCCTCCGCCGCCTGGTACACCCTCGCCTCCTCTGGTCCAGTTAATCTGCGCTGCGTGCGGCATCAAGTTCGCCTCGATGGACAATCTGGTAGCCCATCAAGCGTTTTATTGTCCCAAGAGGCCGGAGCCTCAGGAACACCACTCGAGGTGCACCAAATGCAAAGCGATTATCGAACCTGGGGGCACTCATACTTGCACCAGTGGACCGACAGGAGGTTGGAGATGTCCCGTTTGCGGCACGGTCAGCCCAACAGCCGGCGCGGCTCAGCGTCACATGGACGCGCACCAGGGCGTGAAAGCCTTTCGGTGCACGATCTGCCGTTACAAAGGGAACACGTTACGCGGCATGAGAACGCACATCAAGATGCACTTTGAAAAACGCGGAACCGATCTACAGGAAGAAAATTACATAACGTGCGTGCTCGACGACGAAACGGTTCTACCGAACCCGGAGCCAGCGCCAGCCACCACACCCGAGGAGATCCCCAGAGAAGTGCAAGTGAACGGAAAAACGGAGGTTCGGAAGAGTCCtcagccgccaccgccgccgccgccgccgccaccagcGGTCACGGACAAGGTGAAGCAAGAACGGGAGGACACGCCACCCCCTGAGGAGAGTCTGGACCCAAACAAGAGCGGCCCGCGTTACTGCAGGTCGTGCGACATCAGTTTCAATTATCTGAGCACGTTCATCGCGCACAAGAAGTTCTACTGTTCGAGCCACGCCGGCGAGGCGAGCAAcaataacaacaacaacaacaacaacaactccAGCAGCCACGCGACGACACCACCGAGCGGCAGAACGGAGGCATCCGTGCTTTAA
Protein Sequence
MHLSWHGSWPRENRAHTTSGKKERDEEEEEEEEEEEEEEEEEEEEEEEAERTHSGLTNQPCLLPVRRVFAYPCHDQDPICIAPMKLLPLRSFSCRSVHPCLPPTGEDEEWSDSDKTPSVSSGVDGGGSAVSSPIAPVGEEESSLPPPPRLNPPSTTVAIVNSATEDIKLRLSVLSEDARKRLASLTEDIEVARNLRNRHATPRTNQTRESSPKDTDEESSMVLVKEEDCQPRSSSSSSSSTRRRESVCRRDSEDSSRRSNTDEPPPSEKKLKLDDEATPRLRLNTSLATDPALRPAAVAALTVKPENTSPPNPVPALPAGLQNAIASGRLFVLPTDGKETITVEPARPAPLICPPCGIRFSSASTLEAHRTFYCAHRPRLEEETANEEDEEKSNKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPTAPTTATTPGSGAATASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPPAAATVASSSVKASPPTSASPGESPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGHLQPMTRGLATTPQNTVVEPSPVLRAVNKPTTPASVVASSTSPTGSAPLDLSVRKSPAHQDEKENRVSPAPSSLPPPPGSPRSRGSGSPRARSIGSVPAAGVVAAPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETSVSNSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHSRCTKCKAIIEPGGTHTCTSGPTGGWRCPVCGTVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIKMHFEKRGTDLQEENYITCVLDDETVLPNPEPAPATTPEEIPREVQVNGKTEVRKSPQPPPPPPPPPPAVTDKVKQEREDTPPPEESLDPNKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNSSSHATTPPSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01255959;
90% Identity
iTF_00964084;
80% Identity
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