Xvio006299.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- -
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000008.1:24787994-24792181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 1.1 10.0 2.1 1 23 316 338 316 338 0.97 2 19 0.025 2 9.2 1.5 1 23 387 409 387 409 0.98 3 19 0.035 2.8 8.7 0.2 1 20 464 483 464 485 0.94 4 19 0.0016 0.13 13.0 1.1 1 23 525 547 525 547 0.95 5 19 0.00078 0.063 13.9 0.1 1 23 595 617 595 617 0.97 6 19 0.00064 0.052 14.2 0.1 1 23 623 645 623 645 0.97 7 19 5.4e-07 4.3e-05 23.9 0.4 2 23 689 711 689 711 0.96 8 19 0.27 22 5.9 0.7 3 23 720 741 719 741 0.89 9 19 0.00015 0.012 16.2 1.2 2 23 748 770 747 770 0.96 10 19 0.00019 0.016 15.8 0.3 1 23 779 801 779 801 0.96 11 19 0.092 7.4 7.4 0.4 1 20 856 875 856 875 0.97 12 19 0.0021 0.17 12.6 0.2 1 23 894 916 894 916 0.98 13 19 0.0016 0.13 12.9 0.8 1 23 930 952 930 952 0.97 14 19 0.0015 0.12 13.0 5.3 3 23 973 994 972 994 0.95 15 19 0.02 1.6 9.5 1.4 2 23 1046 1068 1045 1068 0.93 16 19 0.0085 0.69 10.7 1.7 3 23 1097 1118 1096 1118 0.93 17 19 0.037 3 8.6 0.0 2 23 1127 1150 1126 1150 0.94 18 19 0.0077 0.62 10.8 1.1 1 23 1155 1178 1155 1178 0.97 19 19 0.18 14 6.5 0.7 3 23 1209 1230 1208 1230 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGTGGAGTTGCAGAATATGGAAAAGGTGTGCAGGCTTTGCCTCTCGACCGAGGAGCCGAAGTCATCAGTTTTTGGAGGGCAAGACACTTCGGTCTCGTTGGCCACTAAGATACAAGCTTGTCTATCGATACAGATTACGATTACGGACAGATTATCGACGCAAATATGCGGGGAATGTGTTAAAAATGTAAATCAGTGGCATAATTATAAGGAAACTTGTCTTCGTTCCCAAGACAAGTTGCATCAATGGTTGGAGAAACATTTACAAACGAATCCAATGGTTGTGACTATTAAAGATGAACCCGTTGATCTGGAGTTTGACGAAAATAACATCGAGGTTATTTCTGAATCTACCAACGATTCGGACTTAGAGGCTACTAATCTTGAAGAGAGTATAAGTCCTTTAGCGAATACTGTTCAGGTTGAGGAGTTGATGAGCGACGATGAAATAGCTGTAGAAGAAAATCAACCACCTGTTACAAAGGATATGAATGTATCCGTAAAAACTGAGCCTCGAGAAGACTACGACACAGACTGCACTATAGAAATAGAATCCATTACTGGTAGTGAACTGGTGTTGAATCCTCTTTCGAACACAGAGGACAGGGTTATGGAGGCAGACTCCACTCAAAAGTCCAGTGCGTCCACGTCAGCGGGCAAGAAGAAGTTCAGAAGGGGTCCGCACACGCACTTCAGGGGTGCGCGCGTATACAAACAAAAATGTATACACTGTCAAATAAATTTACACTCCAAATATTCCTATACAAAGCACATGGAAAGATTTCACAGTGACAAGCAGAATGGCACTAGTAACACGTCGGAACTGCAAGACGACGAGGAGTTGGTTGAAGATTTGGAAGACGAGTTGATGAGCATGGAGAAGGATGCTCCATTGACGCAAGTGCAACAGAGCATTATCAGTCAGCTAAAGACGTTCTCGTGTTACTCTTGCCAGCAAGTTTTCACAGATCGTAAAAGTACGCTCAGCCATATTCGGCAACATATGCCGGATCTGAGACCATACACGTGTATCGCGTGTCTGACAGAATTCCCGGATCGGTCAATGTACAAGCTACATTGCGGGGCGTCGTTCGAGTGCGCGATGAAAATCGCTCTTGTCATACCGAAACAAGGCGAGGAGAAGTACTTCACGTGTAACATGTGCTTGCGTTCTCTGCAAGACAGAAGACAATTACTTAGTCATCTGTCGAAACACTCGGATAAACAGTACGAAGAACTGGTGTCTCCGGCGCGATCTCCCCCGAAACTAAAGCCAATGGCACCCCTACCATCTCCCAAACAGGAGATGGTAAAAAAATCGCTCGAGGAAAATTCCAGTATACCTCGTCCTTACAAGAACGGCGACCCTGCGCACAATCACGTATGCGATCTTTGCGGCATGATCTATAGATACAGACCCAATATGCTAAAACATAGAGACCTCTGTCAGCGTTTAGCGCCAGAAGTCCGAACGTCCTACAGGTGTATTCACTGTGGCATGACGTATCTCGTCTTCAAAAAGTTCCACAGTCACATTACGCAAGACCACAAGAAGAAAGAGTTCGCGTGCTCCGAATGTAGCGCCAAGTTCAAGTCCCCTAGTGATTACTTGAAGCATCACGAGGGGCATCGTACGACCCACGGTAAGAAGCAATTACACGAGCGGCGTAGCGAGCCTGTGAAGTCCTCGCAAAGCATTTCGACGCCTATCAAGGACTGGGACACGTTCGAAGCTGAAGTGAACGCTAACAAACTGATGGCCACCAAACAGTACAGCTGTGCGCTCTGTAACTTAGAGTTCGCTACCAGAGCAGAACTCACGGAGCACAGGAACCTCCATCTGAAGGTAAAGATTTACTCTTGCGTGATCTGCCGCAGCATGTTCAGCAGCGCGGGTGCGCTAGAGGTTCACATGAAGGACCACGGCATAGAAGACGCGAACGAAAGGAACGCGAACATTTCTTGCGTAGAGTACAGAACGGTGGAGGACGAATCGCGGGACTCGAGCTCGTTGAACGCGAGCGTCATTTCGGACCCCGGTTCGACTAAGAACGAGTGCGATATGTGCGGtaaaatattctcgaatacCGCGAATCTGAAGCGACACATAAGAAATATTCACAAATATGGCAAAGCCCATGTCGCCTGTACCCAATGCTCGCGAATGTTCAAGAGCAAAGAGATACGCAATCGGCACATCGCCAACGAGCACACCAAGGCGAGGACGGTACAGTGTCCTCAGTGCCCAAAAACTTTCATCTTGCGCACGCACTTGAACCTCCACTTCCGTTCTGTTCATAGCGCGAAATCGTACAGCGGTAGCCACAAGTGCGACATCTGTGGCAAGGAATTCGCGGAGGAACCGTCGCTTAAGATACACAGGAGTTGGCACAATCGAACCAACTCCCGGCTAAGTACACGCTTCATGAAGGACGAGGACCAAAAACCAATGGTACCCACCAAAAACAACGAGGCGTTCAACGCGAACACAGGCAGACCTGCCAGAGCTCGGAAGTCCTTCCCGAACTCACCGCCTGTGAAGCCTAACGGCAATTTCCAATGCCAGGTCTGCAGCGACAAGTTCAACGACGTGACAGAGCTGAGGAAACACTTATGGGATGTGCATTGCGCCCGCAACAAAGCCGAGAAGAACTTCTCGAGCGACGAATTCCAGTGCGAGCTCTGTACAAACATTTTCCCTGATAAAGAGACGCTGGACATGCACATGCAATGGCACAAGGCACATCCCATCCTCTGCGAGAGCAGGCAGCTCAGTTTCCCGTGCGACGTCTGCGGGAAACTCTATAGTTCCCGGAAAACGGTGTTAAGACACAAAAAGCTACACAAGGCTACCAGCATCGCTGCCATAAAATTACAATCGGTGTCCAAGAGCAGCCAACCCTTCTGCACCATTTGTCACAAGGTGTTCCACAGCAATCAGTCGCTGCAGCGTCACAGGTTGAACTTGCACGGCGACATATTTAACCAGCGGCCGCAAATGGTGTACAACAACGCGAGAAAACCGTTCCTGGAGGAACCTAAATCTAAGAAGCTGAAGGTGGAAGAGGAGGACAAGAAAACGCCGTTCGTGATAGACCCACTGAACGCGGGCAGGAAGTCCGTCATGTGTCACGTCTGTAGAAAGTTCTTCCCGAATATGAGCGTGCTGTACAAGCACAAACAGCTGGTGCACAAGTCCAACGCGATCAGGAACGCCACCGCGAAGCAAGTGACCACCGAGTGCATCCCGTTGCCCAGCGGCGACGGCAGGGTCGCCTGCAACATCTGTTTCAAGAAATTCCCCGGTGTGTCGAATCTGCGTCACCATTTCACCGTGAAACACAAGTTCCCGTTGGTGCCGCAGCTCTCGTGCCCCATAGACGGTTGCAAGGCCGTGTTCGCCACCGCCCTCACCCTGAAGAACCACGAACTGTCGCACACCAGCATGATCTTCAGTTGCACGCTGTGCGACAAACACGTGTTCAGCAAGCCGGCGATGTCGAATCACATGCTGACGGTGCACAACACCGTCTACGACGCAGAGAACACCAAGAACTTCCACAGAGAGATGGACCTGAGCACGTACACGGTGGAGGGCGCGGTGGACGCGATCTGTCCTCGCTGCAAGATCAAGTACCCGAACAACAGGGCCATGAAGATACATTACTTCAAATTTCACGAGGGCAAGGATCAATAG
- Protein Sequence
- MDEVVELQNMEKVCRLCLSTEEPKSSVFGGQDTSVSLATKIQACLSIQITITDRLSTQICGECVKNVNQWHNYKETCLRSQDKLHQWLEKHLQTNPMVVTIKDEPVDLEFDENNIEVISESTNDSDLEATNLEESISPLANTVQVEELMSDDEIAVEENQPPVTKDMNVSVKTEPREDYDTDCTIEIESITGSELVLNPLSNTEDRVMEADSTQKSSASTSAGKKKFRRGPHTHFRGARVYKQKCIHCQINLHSKYSYTKHMERFHSDKQNGTSNTSELQDDEELVEDLEDELMSMEKDAPLTQVQQSIISQLKTFSCYSCQQVFTDRKSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPKQGEEKYFTCNMCLRSLQDRRQLLSHLSKHSDKQYEELVSPARSPPKLKPMAPLPSPKQEMVKKSLEENSSIPRPYKNGDPAHNHVCDLCGMIYRYRPNMLKHRDLCQRLAPEVRTSYRCIHCGMTYLVFKKFHSHITQDHKKKEFACSECSAKFKSPSDYLKHHEGHRTTHGKKQLHERRSEPVKSSQSISTPIKDWDTFEAEVNANKLMATKQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDANERNANISCVEYRTVEDESRDSSSLNASVISDPGSTKNECDMCGKIFSNTANLKRHIRNIHKYGKAHVACTQCSRMFKSKEIRNRHIANEHTKARTVQCPQCPKTFILRTHLNLHFRSVHSAKSYSGSHKCDICGKEFAEEPSLKIHRSWHNRTNSRLSTRFMKDEDQKPMVPTKNNEAFNANTGRPARARKSFPNSPPVKPNGNFQCQVCSDKFNDVTELRKHLWDVHCARNKAEKNFSSDEFQCELCTNIFPDKETLDMHMQWHKAHPILCESRQLSFPCDVCGKLYSSRKTVLRHKKLHKATSIAAIKLQSVSKSSQPFCTICHKVFHSNQSLQRHRLNLHGDIFNQRPQMVYNNARKPFLEEPKSKKLKVEEEDKKTPFVIDPLNAGRKSVMCHVCRKFFPNMSVLYKHKQLVHKSNAIRNATAKQVTTECIPLPSGDGRVACNICFKKFPGVSNLRHHFTVKHKFPLVPQLSCPIDGCKAVFATALTLKNHELSHTSMIFSCTLCDKHVFSKPAMSNHMLTVHNTVYDAENTKNFHREMDLSTYTVEGAVDAICPRCKIKYPNNRAMKIHYFKFHEGKDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539739;
- 90% Identity
- iTF_01539739;
- 80% Identity
- iTF_01539739;