Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000008.1:24787994-24792181[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.21 4.7e+02 1.1 4.7 6 43 234 266 232 275 0.76

2 15 1.5 3.4e+03 -1.7 0.1 17 39 316 339 308 343 0.80

3 15 1.1 2.5e+03 -1.3 0.2 14 29 384 399 380 409 0.67

4 15 0.91 2.1e+03 -1.0 0.2 18 29 465 476 461 485 0.81

5 15 0.063 1.4e+02 2.7 2.4 11 26 491 506 478 521 0.75

6 15 4 9.1e+03 -3.0 0.1 15 28 621 634 614 637 0.76

7 15 1.8e-07 0.00041 20.5 0.3 14 44 685 712 680 712 0.92

8 15 0.024 54 4.1 0.1 13 28 775 790 758 805 0.80

9 15 0.013 30 4.9 0.0 14 43 853 879 844 880 0.88

10 15 6 1.3e+04 -3.6 0.0 18 26 895 903 893 908 0.83

11 15 0.13 3e+02 1.7 0.3 5 29 918 942 916 949 0.79

12 15 0.19 4.2e+02 1.2 0.1 19 29 973 983 965 991 0.84

13 15 3 6.8e+03 -2.6 0.1 14 24 1042 1052 1037 1055 0.84

14 15 4.1e-05 0.092 12.9 0.0 14 44 1092 1119 1086 1119 0.89

15 15 2.7 5.9e+03 -2.5 1.3 14 43 1152 1178 1143 1179 0.65

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.21	4.7e+02	1.1	4.7	6	43	234	266	232	275	0.76
2	15	1.5	3.4e+03	-1.7	0.1	17	39	316	339	308	343	0.80
3	15	1.1	2.5e+03	-1.3	0.2	14	29	384	399	380	409	0.67
4	15	0.91	2.1e+03	-1.0	0.2	18	29	465	476	461	485	0.81
5	15	0.063	1.4e+02	2.7	2.4	11	26	491	506	478	521	0.75
6	15	4	9.1e+03	-3.0	0.1	15	28	621	634	614	637	0.76
7	15	1.8e-07	0.00041	20.5	0.3	14	44	685	712	680	712	0.92
8	15	0.024	54	4.1	0.1	13	28	775	790	758	805	0.80
9	15	0.013	30	4.9	0.0	14	43	853	879	844	880	0.88
10	15	6	1.3e+04	-3.6	0.0	18	26	895	903	893	908	0.83
11	15	0.13	3e+02	1.7	0.3	5	29	918	942	916	949	0.79
12	15	0.19	4.2e+02	1.2	0.1	19	29	973	983	965	991	0.84
13	15	3	6.8e+03	-2.6	0.1	14	24	1042	1052	1037	1055	0.84
14	15	4.1e-05	0.092	12.9	0.0	14	44	1092	1119	1086	1119	0.89
15	15	2.7	5.9e+03	-2.5	1.3	14	43	1152	1178	1143	1179	0.65

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGAGTTGCAGAATATGGAAAAGGTGTGCAGGCTTTGCCTCTCGACCGAGGAGCCGAAGTCATCAGTTTTTGGAGGGCAAGACACTTCGGTCTCGTTGGCCACTAAGATACAAGCTTGTCTATCGATACAGATTACGATTACGGACAGATTATCGACGCAAATATGCGGGGAATGTGTTAAAAATGTAAATCAGTGGCATAATTATAAGGAAACTTGTCTTCGTTCCCAAGACAAGTTGCATCAATGGTTGGAGAAACATTTACAAACGAATCCAATGGTTGTGACTATTAAAGATGAACCCGTTGATCTGGAGTTTGACGAAAATAACATCGAGGTTATTTCTGAATCTACCAACGATTCGGACTTAGAGGCTACTAATCTTGAAGAGAGTATAAGTCCTTTAGCGAATACTGTTCAGGTTGAGGAGTTGATGAGCGACGATGAAATAGCTGTAGAAGAAAATCAACCACCTGTTACAAAGGATATGAATGTATCCGTAAAAACTGAGCCTCGAGAAGACTACGACACAGACTGCACTATAGAAATAGAATCCATTACTGGTAGTGAACTGGTGTTGAATCCTCTTTCGAACACAGAGGACAGGGTTATGGAGGCAGACTCCACTCAAAAGTCCAGTGCGTCCACGTCAGCGGGCAAGAAGAAGTTCAGAAGGGGTCCGCACACGCACTTCAGGGGTGCGCGCGTATACAAACAAAAATGTATACACTGTCAAATAAATTTACACTCCAAATATTCCTATACAAAGCACATGGAAAGATTTCACAGTGACAAGCAGAATGGCACTAGTAACACGTCGGAACTGCAAGACGACGAGGAGTTGGTTGAAGATTTGGAAGACGAGTTGATGAGCATGGAGAAGGATGCTCCATTGACGCAAGTGCAACAGAGCATTATCAGTCAGCTAAAGACGTTCTCGTGTTACTCTTGCCAGCAAGTTTTCACAGATCGTAAAAGTACGCTCAGCCATATTCGGCAACATATGCCGGATCTGAGACCATACACGTGTATCGCGTGTCTGACAGAATTCCCGGATCGGTCAATGTACAAGCTACATTGCGGGGCGTCGTTCGAGTGCGCGATGAAAATCGCTCTTGTCATACCGAAACAAGGCGAGGAGAAGTACTTCACGTGTAACATGTGCTTGCGTTCTCTGCAAGACAGAAGACAATTACTTAGTCATCTGTCGAAACACTCGGATAAACAGTACGAAGAACTGGTGTCTCCGGCGCGATCTCCCCCGAAACTAAAGCCAATGGCACCCCTACCATCTCCCAAACAGGAGATGGTAAAAAAATCGCTCGAGGAAAATTCCAGTATACCTCGTCCTTACAAGAACGGCGACCCTGCGCACAATCACGTATGCGATCTTTGCGGCATGATCTATAGATACAGACCCAATATGCTAAAACATAGAGACCTCTGTCAGCGTTTAGCGCCAGAAGTCCGAACGTCCTACAGGTGTATTCACTGTGGCATGACGTATCTCGTCTTCAAAAAGTTCCACAGTCACATTACGCAAGACCACAAGAAGAAAGAGTTCGCGTGCTCCGAATGTAGCGCCAAGTTCAAGTCCCCTAGTGATTACTTGAAGCATCACGAGGGGCATCGTACGACCCACGGTAAGAAGCAATTACACGAGCGGCGTAGCGAGCCTGTGAAGTCCTCGCAAAGCATTTCGACGCCTATCAAGGACTGGGACACGTTCGAAGCTGAAGTGAACGCTAACAAACTGATGGCCACCAAACAGTACAGCTGTGCGCTCTGTAACTTAGAGTTCGCTACCAGAGCAGAACTCACGGAGCACAGGAACCTCCATCTGAAGGTAAAGATTTACTCTTGCGTGATCTGCCGCAGCATGTTCAGCAGCGCGGGTGCGCTAGAGGTTCACATGAAGGACCACGGCATAGAAGACGCGAACGAAAGGAACGCGAACATTTCTTGCGTAGAGTACAGAACGGTGGAGGACGAATCGCGGGACTCGAGCTCGTTGAACGCGAGCGTCATTTCGGACCCCGGTTCGACTAAGAACGAGTGCGATATGTGCGGtaaaatattctcgaatacCGCGAATCTGAAGCGACACATAAGAAATATTCACAAATATGGCAAAGCCCATGTCGCCTGTACCCAATGCTCGCGAATGTTCAAGAGCAAAGAGATACGCAATCGGCACATCGCCAACGAGCACACCAAGGCGAGGACGGTACAGTGTCCTCAGTGCCCAAAAACTTTCATCTTGCGCACGCACTTGAACCTCCACTTCCGTTCTGTTCATAGCGCGAAATCGTACAGCGGTAGCCACAAGTGCGACATCTGTGGCAAGGAATTCGCGGAGGAACCGTCGCTTAAGATACACAGGAGTTGGCACAATCGAACCAACTCCCGGCTAAGTACACGCTTCATGAAGGACGAGGACCAAAAACCAATGGTACCCACCAAAAACAACGAGGCGTTCAACGCGAACACAGGCAGACCTGCCAGAGCTCGGAAGTCCTTCCCGAACTCACCGCCTGTGAAGCCTAACGGCAATTTCCAATGCCAGGTCTGCAGCGACAAGTTCAACGACGTGACAGAGCTGAGGAAACACTTATGGGATGTGCATTGCGCCCGCAACAAAGCCGAGAAGAACTTCTCGAGCGACGAATTCCAGTGCGAGCTCTGTACAAACATTTTCCCTGATAAAGAGACGCTGGACATGCACATGCAATGGCACAAGGCACATCCCATCCTCTGCGAGAGCAGGCAGCTCAGTTTCCCGTGCGACGTCTGCGGGAAACTCTATAGTTCCCGGAAAACGGTGTTAAGACACAAAAAGCTACACAAGGCTACCAGCATCGCTGCCATAAAATTACAATCGGTGTCCAAGAGCAGCCAACCCTTCTGCACCATTTGTCACAAGGTGTTCCACAGCAATCAGTCGCTGCAGCGTCACAGGTTGAACTTGCACGGCGACATATTTAACCAGCGGCCGCAAATGGTGTACAACAACGCGAGAAAACCGTTCCTGGAGGAACCTAAATCTAAGAAGCTGAAGGTGGAAGAGGAGGACAAGAAAACGCCGTTCGTGATAGACCCACTGAACGCGGGCAGGAAGTCCGTCATGTGTCACGTCTGTAGAAAGTTCTTCCCGAATATGAGCGTGCTGTACAAGCACAAACAGCTGGTGCACAAGTCCAACGCGATCAGGAACGCCACCGCGAAGCAAGTGACCACCGAGTGCATCCCGTTGCCCAGCGGCGACGGCAGGGTCGCCTGCAACATCTGTTTCAAGAAATTCCCCGGTGTGTCGAATCTGCGTCACCATTTCACCGTGAAACACAAGTTCCCGTTGGTGCCGCAGCTCTCGTGCCCCATAGACGGTTGCAAGGCCGTGTTCGCCACCGCCCTCACCCTGAAGAACCACGAACTGTCGCACACCAGCATGATCTTCAGTTGCACGCTGTGCGACAAACACGTGTTCAGCAAGCCGGCGATGTCGAATCACATGCTGACGGTGCACAACACCGTCTACGACGCAGAGAACACCAAGAACTTCCACAGAGAGATGGACCTGAGCACGTACACGGTGGAGGGCGCGGTGGACGCGATCTGTCCTCGCTGCAAGATCAAGTACCCGAACAACAGGGCCATGAAGATACATTACTTCAAATTTCACGAGGGCAAGGATCAATAG
Protein Sequence: MDEVVELQNMEKVCRLCLSTEEPKSSVFGGQDTSVSLATKIQACLSIQITITDRLSTQICGECVKNVNQWHNYKETCLRSQDKLHQWLEKHLQTNPMVVTIKDEPVDLEFDENNIEVISESTNDSDLEATNLEESISPLANTVQVEELMSDDEIAVEENQPPVTKDMNVSVKTEPREDYDTDCTIEIESITGSELVLNPLSNTEDRVMEADSTQKSSASTSAGKKKFRRGPHTHFRGARVYKQKCIHCQINLHSKYSYTKHMERFHSDKQNGTSNTSELQDDEELVEDLEDELMSMEKDAPLTQVQQSIISQLKTFSCYSCQQVFTDRKSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPKQGEEKYFTCNMCLRSLQDRRQLLSHLSKHSDKQYEELVSPARSPPKLKPMAPLPSPKQEMVKKSLEENSSIPRPYKNGDPAHNHVCDLCGMIYRYRPNMLKHRDLCQRLAPEVRTSYRCIHCGMTYLVFKKFHSHITQDHKKKEFACSECSAKFKSPSDYLKHHEGHRTTHGKKQLHERRSEPVKSSQSISTPIKDWDTFEAEVNANKLMATKQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDANERNANISCVEYRTVEDESRDSSSLNASVISDPGSTKNECDMCGKIFSNTANLKRHIRNIHKYGKAHVACTQCSRMFKSKEIRNRHIANEHTKARTVQCPQCPKTFILRTHLNLHFRSVHSAKSYSGSHKCDICGKEFAEEPSLKIHRSWHNRTNSRLSTRFMKDEDQKPMVPTKNNEAFNANTGRPARARKSFPNSPPVKPNGNFQCQVCSDKFNDVTELRKHLWDVHCARNKAEKNFSSDEFQCELCTNIFPDKETLDMHMQWHKAHPILCESRQLSFPCDVCGKLYSSRKTVLRHKKLHKATSIAAIKLQSVSKSSQPFCTICHKVFHSNQSLQRHRLNLHGDIFNQRPQMVYNNARKPFLEEPKSKKLKVEEEDKKTPFVIDPLNAGRKSVMCHVCRKFFPNMSVLYKHKQLVHKSNAIRNATAKQVTTECIPLPSGDGRVACNICFKKFPGVSNLRHHFTVKHKFPLVPQLSCPIDGCKAVFATALTLKNHELSHTSMIFSCTLCDKHVFSKPAMSNHMLTVHNTVYDAENTKNFHREMDLSTYTVEGAVDAICPRCKIKYPNNRAMKIHYFKFHEGKDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539775;
90% Identity: iTF_01539775;
80% Identity: iTF_01539775;