Basic Information

Insect: Xylocopa violacea
Gene Symbol: Snai1
Assembly: GCA_963969225.1
Location: CAXAJV010000008.1:17559671-17562867[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.2 7.4e+02 1.1 0.1 3 16 65 78 63 80 0.74

2 13 0.0078 0.63 10.8 0.1 1 23 237 259 237 259 0.95

3 13 1.5e-05 0.0012 19.3 1.2 1 23 267 289 267 289 0.98

4 13 6.2e-06 0.0005 20.5 0.2 2 23 297 318 296 318 0.97

5 13 1.8e-06 0.00014 22.2 0.8 1 23 324 346 324 346 0.99

6 13 3.5e-05 0.0028 18.2 2.2 1 23 353 375 353 375 0.98

7 13 4.5e-06 0.00037 21.0 0.6 1 23 381 403 381 403 0.96

8 13 1.2e-05 0.00093 19.7 0.1 1 23 409 431 409 431 0.98

9 13 6.4e-07 5.2e-05 23.6 1.2 1 23 437 460 437 460 0.96

10 13 3.4e-06 0.00027 21.4 0.5 1 23 466 489 466 489 0.96

11 13 1.3e-06 0.0001 22.7 2.1 1 23 495 517 495 517 0.99

12 13 8.3e-05 0.0067 17.0 0.4 1 23 523 545 523 545 0.94

13 13 0.00026 0.021 15.4 0.1 1 23 551 575 551 575 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.2	7.4e+02	1.1	0.1	3	16	65	78	63	80	0.74
2	13	0.0078	0.63	10.8	0.1	1	23	237	259	237	259	0.95
3	13	1.5e-05	0.0012	19.3	1.2	1	23	267	289	267	289	0.98
4	13	6.2e-06	0.0005	20.5	0.2	2	23	297	318	296	318	0.97
5	13	1.8e-06	0.00014	22.2	0.8	1	23	324	346	324	346	0.99
6	13	3.5e-05	0.0028	18.2	2.2	1	23	353	375	353	375	0.98
7	13	4.5e-06	0.00037	21.0	0.6	1	23	381	403	381	403	0.96
8	13	1.2e-05	0.00093	19.7	0.1	1	23	409	431	409	431	0.98
9	13	6.4e-07	5.2e-05	23.6	1.2	1	23	437	460	437	460	0.96
10	13	3.4e-06	0.00027	21.4	0.5	1	23	466	489	466	489	0.96
11	13	1.3e-06	0.0001	22.7	2.1	1	23	495	517	495	517	0.99
12	13	8.3e-05	0.0067	17.0	0.4	1	23	523	545	523	545	0.94
13	13	0.00026	0.021	15.4	0.1	1	23	551	575	551	575	0.94

Sequence Information

Coding Sequence: ATGACGGCTGATTCAGAAAAGGATAATACTCACTGTTTAATATGTAATAGTAAAGTTGGTGTGTCTACTAGGAATAGCATACGTATCTTTAACGAGAACTCTGTAACATCGTCAGAAAAACCACTTGTAGATACAATTTGTACCGTTTTAGAAACAGACTTAAACGAAGAGAATGTACATTCTCGTGTAATATGTAAAAAATGTTATAAGTTATTTAACGAGATTGATGAACTTGAAAATCGACTAACAGAAGTGAAATTAGAATTGTTCAGTAATTATAAGAAAACTATAAAAAAGTTATCCGATGTGCAAAACGAAGAAGAATATAATGATCATGATTATATAGAAAATGCAGAAAGTCAGGATACCGATGGGGAAATTAAATTTGTATTAAAGgacGAACAAGATGTTCAAGAATTGaatggagaagaagaagaaagattagaggaagaggaagaggaaccTCCCGGTGAGTCAGAGGAAATTATTCTCAAAGTTGAATCTTTACCAGAAACAAGCAATACCGAAGAAAGGAAGAGAATGAAAAGGACAAAAATCGCAGCGAAAGTTGAACCTCCTCCGGAACAGattgtaactAGGGATGGTTCCATATACACCTGTTTGTTATGTATTAATGAAGAAGATAAAACTGTAGGAGATGCAAAGTCTATTATTGCGCATGTAAGGAGCGTGCACGAAACCCGTTTATACATCTGCGATATATGCGGTGatgattttagaaagagaaatgAACTTTCTGTTCACCTTGACGATCATGTTGCTAAAGAGGAAGGAGATTTTCAATGTGAAATATGTAACAGAATATTTAGCAATTTGCGGTTATTTAGGATTCATAAAAGAATACATTATCCGCAAGTGAAATCTTGGCCCTGTGAAACTTGTGGTAAAAGATATAGTTCCAGAAACCTACTGGAGGAGCATATTAATACCCATACGGGTGTTCGTCCGTATGTATGCGACAATTGCGGTAAAGATTTTGCTTCCAAATATACATATAAAGCACACGTAAAAACACACGAAGTACGACCTCGACCTTTTGAATGTTCACAATGTAATAAAACGTTTTTGAGTCAACAAAATCTTAATCAACATGAAAGAACTCATAATGGTGTAAAGGAATACGTCTGCCATCAGTGCGGAAAAGCGTTTGGCTCACCTCATAATCTAGAAGTGCATAATATAGTACATACCGGATACAAACCGTACATATGTAGGGTATGCGGTAAAGCGTTTGCACGTAAAGCTGAAATAAGGGATCATGAAAGAACACATACTGGCGAAAAACCGTATCAATGCGAATTTTGCGGAGCTACATTTAGTCAACGATCAAACTTACAATCTCACAAACGTGCAACGCATTATAACGACAAACGATATAAATGTGATGATTGTGGAAAAGGGTTTAAACGACGAAGATTATTAGATTATCATATAAAAGCGGCTCATACTGGTGAAAGACCGTACAAGTGTGATATATGTACAGCAACATTTGTTTATCCCGAACATTTCAAAAAACATATGCGCATACATACCGGAGAGAAACCGTATCTCTGTGAGGTTTGTGGCAAAGCATTTAATAGTCGGGATAATAGAAATGCACATCGCTTCATACATAGTGATAAAAAGCCATATGAATGCTTAGTATGTGGTATGGGTTTTATGAGAAAACCTTTGCTATATGCTCATATGCAGACTCAGGGTCATTTAAATGATACCATTGTCGTTAATCAACCACGACTTACTACGGAAGATGATCAAGTCATAACAATCGCCGATGGTAATGTAGAACTTTTAGTGGACGAAGCAGAAAACGATCAGTTAGATGAAACTGAATTGTATGTGACGGAATTAAAAGATCATGTCATAATACAACAACAAAGCGAGGATCAAATGTATAACGAAGAAGATGTATTAAATATTCCGACGGAAGAACATGTCGCGGGTGAGGAAGTGAATCATCTCGTTGATGGAGAGATGAGTTTTGTTGAAAACGAAGCAATGGATTGCAAAGCTGAGGATGCAGAACAAGTAGAAgaggtttacaattatactgaaGCAGAAGATGTTGAAACAATTGTTGTACCAACTACTTCGGAATACAAAGAAGAAGGAGAAGGAAAGAATGCGGTCCGATTAGTGCAAATTCGATTTCCAACATCAGTTAACAGGGATGGCCGAAGTTGGTTAGGTTTAGTGCAAAACTCGTGA
Protein Sequence: MTADSEKDNTHCLICNSKVGVSTRNSIRIFNENSVTSSEKPLVDTICTVLETDLNEENVHSRVICKKCYKLFNEIDELENRLTEVKLELFSNYKKTIKKLSDVQNEEEYNDHDYIENAESQDTDGEIKFVLKDEQDVQELNGEEEERLEEEEEEPPGESEEIILKVESLPETSNTEERKRMKRTKIAAKVEPPPEQIVTRDGSIYTCLLCINEEDKTVGDAKSIIAHVRSVHETRLYICDICGDDFRKRNELSVHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCDNCGKDFASKYTYKAHVKTHEVRPRPFECSQCNKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCDICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIADGNVELLVDEAENDQLDETELYVTELKDHVIIQQQSEDQMYNEEDVLNIPTEEHVAGEEVNHLVDGEMSFVENEAMDCKAEDAEQVEEVYNYTEAEDVETIVVPTTSEYKEEGEGKNAVRLVQIRFPTSVNRDGRSWLGLVQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00230172;
80% Identity: -