Xvio006818.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylocopa violacea
Gene Symbol
PAXBP1
Assembly
GCA_963969225.1
Location
CAXAJV010000011.1:18675362-18691119[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5e-28 5.1e-24 85.5 1.7 3 272 542 750 540 752 0.92
2 2 0.44 4.4e+03 -2.9 0.0 45 91 1208 1254 1196 1258 0.84

Sequence Information

Coding Sequence
ATGTCATTATTTAATAAACCGAAGAGAAACATCCGTCGTCGACCTTTCAACGACGATGACGAAGATAACGAAAACAGGATAGAAGTGGAGGATGCACAACCTGTAAGATCAAAAGCAAAGAAGAAAGATAAACCAAAGCAAACGCTCCTTAGTTTTGGAGAGGAGCTGGAAGAAGCGGATGATGGAGAAGTCTTTAAAGTGAAGAAATCATCCAGGAGCAAAAAGTTGATGAAACAGCTAGATCACGAGAGGAGAAAAAAGAAAGGTGAAGAGAAAATGCAAGTGGACTCTGAGCAAGCGAACATGTCCATTAAACAGGAAAAAGATTTAGAAATAAAGACTGATGATCTAGTAgttaaaataaaaaatacggGACCTTTGATACTAAATGGACGAGCTGCACTGGCAGCTGGAAAAGATGATTATACATCTGATGAAGAGGAAGATGAACCACGCAGTCATAAGTTTAGAAGAAACACGGACAAAGCTGATACAATGAAAATTCTGTTGGAAAGTGGTTGCATACCCGATGCTGCAATGATTCATGCAGCTAGAAAATGTAGACAAAAGGCAAGAGAGTTAGGAACTGATTATATTCCTATAGAAGAACAAAGTGACGATAAGGGCAAGTCAAGACTTATTAGGGAAGAAGATCACGATAGAAGCGATGATGATGATTCCCAAGATCGAATTGATATGACTGTTAACACTGAAGCACGTGATAAAGAAAAAAGAAGGGAAGCATTTCTTGCCTCGCAAGTTCCATTAAAACTTTCTGATGATGAAAGTGAACATGAAAATGAAGAAGAAGAGTGGGAAGCACAACAAATTAGAAAAGGTGTAACTGGTGCACAGATTGCAGCAGCGCAACAAGATTCTATGATACAACAGCAATATTCAATGAGTATGAATGTAAATCCAATAATGGGAAGTGGGATATCTTTGGAAATGGTGATGATGCCAGCTCCACCGCCTCCTCCGACAATTCAACCACCCGATCCAACAAAAATAGTACCGATTACTCCTCACGAAGTTGTGAATAAAATGCGTGCGAGATTGGACAGTTTAAAAGAAGTACATCGACGTCATCAATTAGATCAGGACCGTTTAGAGCAAGAGTTAGGGCAAACAATGAAAGAACTGGACGATGGTGAAATTCGTGCACCGCAGCTTGCACAGCgcttcagatattaccaagaGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTGCCGCTGGTTGTCGGATTGGAGCAACGTTGGTTAGACCTTTATAGTGAACGTGCAATTGAACTAATGGAAAGAAGGCGGCAAGATACAAGGGATCAAGCAGAAGAGATTACAACAGCTGCAAGAGGGCAACCTATACGAAGAGGACCAGAAATTGAAGCTCGTGTCCGTCGAGCTACAGAAAGAGAAGGAAGAAGAGCACGTCGAAGAAGAGCTAGAGAATTAGCTCCCACATTACCAAAACATATTGATGGAATGTCTAGTGATGACGAAGTTACTGAGCAGCAAAACCTTGCATTTAAACAAACGAAAGACGAAATTGATAATGAAAGTaaggaaatatttgccgatgtcATGGATGAGTATTGCACAATAAGAGGTATACTTTCAAAATTGGAGTCTTGGAGAGAAACCGATAGGGATGCTTATATGGAAGCTTATGTGTCTTTATGTATACCAAAAATCATTTCCCCTATTGTTAGACTGCAACTGTTAACATGGAATCCTATTATGGAAAGTGCGGATATAGAGAGAACAAAATGGTATAACACATTGCTCTTGTATGCATTAGACAATAAAGAAACTGAAGAATCGCTCAAAGTAGatccagatgttagattagtaCCATTTACAGTGGAAAAAATTGTTTTACCTAGATTAACATCTATAGTTGAGAGAATATGGGATCCAATGTCTACATCACAAACATTACGACTTGTAGGCACAGTAAATCGTCTTATCAGGGAATACcctaatttaaatgatagcagtAAACCACTAGAGACACTATTTAATACTATATTGGAGAAAATTAAATCGGCAGTAGAAAATGATGTTTTTATACCAATTTTTCCAAAACAAGTTTTGGATACTAAGCATCAATTTTTTCAAAGACAGTTTGCAATGGCTGTGAAACTTTTAAGAAATTTATTAAGCTGGCAAGGTCTTCTCGGGGATACACAATTGAAAAATCTAGCTCTTGGTTCACTATTAAATCGGTACCTTTTAGCGGGTTTAAGAGTATCGGTTCCAACCGATGCACTGTTTAAAGCTAACATGGTAATGAGTACTCTTCCTCGCGCATGGTTACAAGGTGAAACAATAGAACATCTAAGAATGTTTGCTACACTGATTCAACAACTTAGCGAACAATTAGATCAAGCGAATCCAGCGCATAAGCAGGAGATAAGTTTCACTCACACAGATGGTGAAGACGTGTTCATGGGTCACAAAGATAGGAGCAGAAAAGAATATATATACTCTTATAGTACACTCTCGAGTTCGGGTGTTTTATTACCATCTGGTGCGTCATCTTCATGGGGTTTTAATGGGATACTTAAAATTCAAGCAGAGGAAAACATTGCCACAGTGCAGTTGGAATCACTAAAAATGAATATATGGAATGGCAAAATGCAAGAACAAGGAGAAAATACCGATATTCCGGAAGATGTAACTGATCTTTTAAAACCATTTCAAATAACATACAGGGATGGTCTTGTTGAAAATTTTAGCACAGAAGCTACATCTCCTTGGTCTGTAAATATAAAGAGGAGTATTGCAGGAATTTTACAACTAGATTTATTGAGCTTAGAAAAGGAAACAGCGTTTCATTCAACTGAAAGAAATCATTATGGTCAATGTAATATTGAATACATTGCTAACCCAGAAGAAAAAAATGAATGGATAATAAGAAAATTTTTTGATCCTCGAACTTGTATTGGACACCCACATTATACTTGGTCAAATGTTCCTAAAATGTTGTGCCCAAATGCTGATCAGAATCCAATATTAAAATCCAGTGAAAGACTATATCAAGTTAAGATGAATGGATCTGTAAATGAGATTTTGTTTGTTAATGCTTCTGGAGGCATATATGTTCAACCCTTTCAAAGTTTTGGAGAAGCACATTTCCATTTTACAAGACAAATCTTCAATTTAATTTTGGTGCAAGATACAATAAATAAAATATCCATCAAAGACTTATATTTCAAAGTTCTACAACATGAACTTCCAGAATTTGATTTCACCCAAGGCAGAGGTACCCTTGATAAGAATACTGTTTTTAAATCTATAGGAACATTGCTAGATCGTTTAAGTCAAAGACTTGAAAATCCTGGTTTGGATACAGAAACTGATAATTTACATAACACAACAATTACTGTACTGCTTTACTATCTTGGAATGTTAGATGTTGCCGATTTACGCAGTGCATATACGAAAATTTCTGGAACAAGTTATAAAGAAGAAACCATACGGAATATGTTTCTTGAAGCTCTTCCTCAAATTGGCACAAAAGAAGCAGCATTATTCATACTGGAATTAATCCAAGATAAAAAAGTTTCTGACATGTCAGCAATGCAACTTCTTACACAATTACCATTCCACATTCGAAAACCTGACGTCCAGTTATTAGTAAATCTACAAGCATTTTTAAATTTACCAGAGAAAATTTCTGCTGAAGTTCAGAATACTGCCATTCTTGCATATGGCACACTAATTTATAAAACTTGTTTACTGTACTGTCCATATGAGATGTTAGATgactatgtacgtttatatctcGATAAATTCACAGAGACGAAGGAATATGAGAAAAAAATGATTTGGTTGGAAGGATTAgcaaatattcagttaggaagaGTGGTTGAATTTTTAGAGCCAATTGCAAGTGGTAATAATGCAGAATCACGTCATTTTCGCGTTCTTGCTGCATGGGCATCGCTTCCAACCGCTCCTTTAAGACCTGATGTTATATATCCTGTCTATTGGCCAATATTAATAAACAGAACTGAACATTTAGAGATGAGAGTAGCAGCATTGACATTACTTATACTTTCTAGTCCAACACCAAGCAGAGTAATATCTTTATATTGGTATATGCAAAATGAACCCAGTCAACATTTATATAACTATTTTTATACTATTTTAAAATCCATGGAGCATACTACACATCCTTGTTATGTTCATATTGGTGTAATAGCTGCACAATTTACACGAGTACTTCATCCACCGACAAATCGATATTTAATTACTGGTAATTATTTATTTGATTACCAAGATACATATAGAAAATTTGGTGCTATGATACATGGTATTATTATTGCTAATCCTTTAACAAACATACCAGAGGTTTTGTATGTGACAGTGAACACCTATGGCAGTGGGATCAATATCAATCATGTATCTTTATATATTAAAGCCGAAGGTCTTTTACATGCATTATCAACGCATTTAGATGGTCCAACACAAGTAAAAGACATATTAAAGCAATTTAAAttggaccagaagcaaaatggaCCTGTGCATTTAGAAATTATTGCACGTATTCAAGAGAAAacgattttatgtcttcatcttAATGAAACAAATATCATTAAAGGATTTAAATATCTTTCTTCTTTACCTGacaacatatataatatttatcaaAATATGGAATTTCACGTTAATCAACAACGTATTAATGTTCCATTAATAATGGAATCGGTACAAGTCACAGATGTGGGAGCAAATGTTAGACTTGCAATTATTGCAACATCATTATTTTCAATGAGAGGAAATTTTACTCGTATTTCAATTGGTCGCAACaatcatgttatattacgAACATCCCTTCATAAATCAGAAATAATTGAAAGTTATAATCCTTTAATCAATACATGGCACAGTGCAGAGAAAGCATATTCTATTCACGGGTATCTTCCAGTTAATATTACTCTTGGATTTAAGGAACGCCCATTCATTTCATATAATACTCCTGGTGAACACCTTAAAATGGGCATTACAGCTCATACGAGAACGTCTACTAATATAAAAGGTTTAGATATTAGATCAAAATTGAATCTAATTTGTTCTACTTGCCCACACATATATATAGTTACAAAATCACCAACGTACAAACCAAAGACAATAGATATATTTCAAATTGAATTAGCGGAATTAGGAGGTCAAATGTATGTAAAACTTTTTGACTGCGAGAATGTAATCTCACGAGAAAAATTAATTCGAGATGTATTATCTTCACATCGAGCTAATTATCCtatttggccatttctgGAGTTTGCTTTAACAGCCCTTCATTTCTTAGATTACTGCACATATGTGCCACCAAAAGGTAGTTGTGGTTTAGCTGCCTACATTAGTACAATTGATTCACAACGTACTCAAGTAAAATTTGAATACAATAAAGCGCAAAGCAATCACTTGTTATCTTTAACACATCGCAACTCAGAATCATCACAAATTCTTCAACAATGGAATTTGGCTGCACTTTATGAGATTACCAGTTGGATATCTGATATGGTAAAAATTAAAGCAACAAGAATTATACCAGGACAAAAGGTTTTTAAGTTTTGTTTAGAAGTAGAAAAAGATTTACCTTGGGAATGGGATTTCTTAAACACTAAGCCAAGCGATCCTGCTAAAATTGCGCTCAATGCTGTCTGGGGATACTCTGATGCAGCAAAAGGCAAATGTAGCGGATCTTCGATCATATTAAATTTATTGGGTGAAATTAGTAAAGAACAATTAGAATATACTAGAGAACCACAGTGGCCTTATGAACAATGCCGAAAACAATCTGTAGGAAAACGTTTTACTCCGTTCTCTGATGCCTGCTATGAGGCTTCAAGAGAATTGTCAACCTTGAGAAAATATCAAATTATTGCACAGCATGAAAATATACCAGAAAACCTGAGGAGATTAGCCTGGAAATTGTGCGCTTTTTATGATTTAATTGGTGGAAACAGCAGTTCTGATTCTATCTCCAAAAAATTTATTGTGACAGCAACATTTCCAAAAGAATCAGATACCGGTGAATTATCACTTAACACTGATAGAGTAGCAATTGAATACAATTATAATCTTATAGATTATTTCTTAACTAGAACTAGAATTCACAAATACATGGATTTGGCAATTTTAAAAACTTTCTTTGGCACATGTATTGTAACACCAGACTACATAAGATCAATTCACAACGTCACTTATTCATTCAGAAAAAAATCTGAAGTTTTATTACTTGGCCAGTGTTATAATGAAAATCCAAAGTATGCATTAACAGCCCAAAATGGTTTATACGGTgttaatattaatatatatgATGAAATAGATACAGTACGAATTGTATCTAATCAAAATGGaggaacaatatataataaaacaATGCATATTCCATTACCACAAAGTTTTATGTTTCACACATTGGGatcaaaaagGGTGAGGTTGGACAGTAATTCTGTTGACATAATAGTTCCTAACTTTTATTTATATATGCATTGGACACAAGAACAAATTCTTCTGTTCTTTCCAACATACCTATTAGAATTTAGTTGCGGTATGTGTACATTAAGCACTCAAGACACTGGTAATTTATATGAGAAACTATAA
Protein Sequence
MSLFNKPKRNIRRRPFNDDDEDNENRIEVEDAQPVRSKAKKKDKPKQTLLSFGEELEEADDGEVFKVKKSSRSKKLMKQLDHERRKKKGEEKMQVDSEQANMSIKQEKDLEIKTDDLVVKIKNTGPLILNGRAALAAGKDDYTSDEEEDEPRSHKFRRNTDKADTMKILLESGCIPDAAMIHAARKCRQKARELGTDYIPIEEQSDDKGKSRLIREEDHDRSDDDDSQDRIDMTVNTEARDKEKRREAFLASQVPLKLSDDESEHENEEEEWEAQQIRKGVTGAQIAAAQQDSMIQQQYSMSMNVNPIMGSGISLEMVMMPAPPPPPTIQPPDPTKIVPITPHEVVNKMRARLDSLKEVHRRHQLDQDRLEQELGQTMKELDDGEIRAPQLAQRFRYYQELRGYVTDLVECLDEKLPLVVGLEQRWLDLYSERAIELMERRRQDTRDQAEEITTAARGQPIRRGPEIEARVRRATEREGRRARRRRARELAPTLPKHIDGMSSDDEVTEQQNLAFKQTKDEIDNESKEIFADVMDEYCTIRGILSKLESWRETDRDAYMEAYVSLCIPKIISPIVRLQLLTWNPIMESADIERTKWYNTLLLYALDNKETEESLKVDPDVRLVPFTVEKIVLPRLTSIVERIWDPMSTSQTLRLVGTVNRLIREYPNLNDSSKPLETLFNTILEKIKSAVENDVFIPIFPKQVLDTKHQFFQRQFAMAVKLLRNLLSWQGLLGDTQLKNLALGSLLNRYLLAGLRVSVPTDALFKANMVMSTLPRAWLQGETIEHLRMFATLIQQLSEQLDQANPAHKQEISFTHTDGEDVFMGHKDRSRKEYIYSYSTLSSSGVLLPSGASSSWGFNGILKIQAEENIATVQLESLKMNIWNGKMQEQGENTDIPEDVTDLLKPFQITYRDGLVENFSTEATSPWSVNIKRSIAGILQLDLLSLEKETAFHSTERNHYGQCNIEYIANPEEKNEWIIRKFFDPRTCIGHPHYTWSNVPKMLCPNADQNPILKSSERLYQVKMNGSVNEILFVNASGGIYVQPFQSFGEAHFHFTRQIFNLILVQDTINKISIKDLYFKVLQHELPEFDFTQGRGTLDKNTVFKSIGTLLDRLSQRLENPGLDTETDNLHNTTITVLLYYLGMLDVADLRSAYTKISGTSYKEETIRNMFLEALPQIGTKEAALFILELIQDKKVSDMSAMQLLTQLPFHIRKPDVQLLVNLQAFLNLPEKISAEVQNTAILAYGTLIYKTCLLYCPYEMLDDYVRLYLDKFTETKEYEKKMIWLEGLANIQLGRVVEFLEPIASGNNAESRHFRVLAAWASLPTAPLRPDVIYPVYWPILINRTEHLEMRVAALTLLILSSPTPSRVISLYWYMQNEPSQHLYNYFYTILKSMEHTTHPCYVHIGVIAAQFTRVLHPPTNRYLITGNYLFDYQDTYRKFGAMIHGIIIANPLTNIPEVLYVTVNTYGSGININHVSLYIKAEGLLHALSTHLDGPTQVKDILKQFKLDQKQNGPVHLEIIARIQEKTILCLHLNETNIIKGFKYLSSLPDNIYNIYQNMEFHVNQQRINVPLIMESVQVTDVGANVRLAIIATSLFSMRGNFTRISIGRNNHVILRTSLHKSEIIESYNPLINTWHSAEKAYSIHGYLPVNITLGFKERPFISYNTPGEHLKMGITAHTRTSTNIKGLDIRSKLNLICSTCPHIYIVTKSPTYKPKTIDIFQIELAELGGQMYVKLFDCENVISREKLIRDVLSSHRANYPIWPFLEFALTALHFLDYCTYVPPKGSCGLAAYISTIDSQRTQVKFEYNKAQSNHLLSLTHRNSESSQILQQWNLAALYEITSWISDMVKIKATRIIPGQKVFKFCLEVEKDLPWEWDFLNTKPSDPAKIALNAVWGYSDAAKGKCSGSSIILNLLGEISKEQLEYTREPQWPYEQCRKQSVGKRFTPFSDACYEASRELSTLRKYQIIAQHENIPENLRRLAWKLCAFYDLIGGNSSSDSISKKFIVTATFPKESDTGELSLNTDRVAIEYNYNLIDYFLTRTRIHKYMDLAILKTFFGTCIVTPDYIRSIHNVTYSFRKKSEVLLLGQCYNENPKYALTAQNGLYGVNINIYDEIDTVRIVSNQNGGTIYNKTMHIPLPQSFMFHTLGSKRVRLDSNSVDIIVPNFYLYMHWTQEQILLFFPTYLLEFSCGMCTLSTQDTGNLYEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01417703;
90% Identity
-
80% Identity
-