Xare013404.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000467.1:182931-183341[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-11 2.9e-08 33.7 0.1 3 37 17 51 15 55 0.95 2 2 3.5 1.8e+03 -0.9 0.0 9 19 51 61 51 62 0.84
Sequence Information
- Coding Sequence
- ATGGTACGAACGTATAAGAAGAAAAGTTCGAGACTTAGTTGGTCCATGGAAAACATGAAACAGGCAATTGATGCAGTCTTAAGCAAAACTGCTGGCTATAGAAAAGCAGCTCACCTGTATAGTGTACCTCAGACCACATTAGAGCGTCACGTCGCTAAAATAAGGAAAGGCGAGCTGTCTGTTGACCCTACTCCAGGTAACTTCAAGCCCGTGTTTTCCAAACAAGAAGAAGAGGAACTGGTAAAGTACATTATAGAAATGGAGAAACGTTTGTTTGGTTTAACCACTATCGTCTTACGGAAGCTAGCTTATCAGCTAGCGGAAAAAAATTGGAAAGCTCACAATTTTAATCATGATAAAAAGATAGCTGGCGTAGATTGGTTAAAGGGATTCTTGAAGGACCAGCACTAA
- Protein Sequence
- MVRTYKKKSSRLSWSMENMKQAIDAVLSKTAGYRKAAHLYSVPQTTLERHVAKIRKGELSVDPTPGNFKPVFSKQEEEELVKYIIEMEKRLFGLTTIVLRKLAYQLAEKNWKAHNFNHDKKIAGVDWLKGFLKDQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538669;
- 90% Identity
- iTF_01157608; iTF_01538669; iTF_00874382; iTF_01375720;
- 80% Identity
- -