Xare010774.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000347.1:377640-378020[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-12 2.1e-09 37.4 0.0 2 36 12 46 11 51 0.92 2 2 4.4 2.3e+03 -1.2 0.0 2 10 85 93 84 97 0.81
Sequence Information
- Coding Sequence
- atggagccacaaaagcggcgaaaaatatacagtgaagcacaacttgccgaagcaatcaaAGCAATTAATAACGGTACAAGTGTATATGAGGCATCAAAAAGGTTTAATATTCCCAAAACTACATTACGAGACAAACGGGACAGGAAATATAATAATGATATTTGTGGAGTTCAGCCGGTTCTTAATTTAAGTGAAGAAAAACAGATTGTAGACTGGATTCACTACCTTGGCAAGATGGGATTTCCAGTTACAAAAGAACAATTATTAGAAGCAGTGGCTAAGCTAGTCCAAAACTTAAATCATCCAAACCCTTTTAAAAATGGTGTGCCTGGCAGATACTGGTTTGAGAATTTTATAAAGAGACATCCAACAGTATCTTAA
- Protein Sequence
- MEPQKRRKIYSEAQLAEAIKAINNGTSVYEASKRFNIPKTTLRDKRDRKYNNDICGVQPVLNLSEEKQIVDWIHYLGKMGFPVTKEQLLEAVAKLVQNLNHPNPFKNGVPGRYWFENFIKRHPTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906041;
- 90% Identity
- iTF_00906041;
- 80% Identity
- -