Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.3e-17 1.2e-14 54.2 0.0 1 43 27 70 27 72 0.95

2 2 2.3 1.2e+03 -0.3 0.3 6 15 164 173 153 175 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.3e-17	1.2e-14	54.2	0.0	1	43	27	70	27	72	0.95
2	2	2.3	1.2e+03	-0.3	0.3	6	15	164	173	153	175	0.80

Coding Sequence: ATGTGGCAGAAGTGCTGGAACACACAGACGCTGGTCCACAACCTGAGATTCCGCGAGCGTGGACCGCTCAAGTCCTGGCGACCAGAGACCATGGCCGAGGCAATCTTTTCCGTGCTTAAAGAAGGACTGTCCTTGTCTCAGGCGGCCAGAAAATATGATATACCATACCCCACGTTCGTGCTGTACGCAAATAGGGTGCACAACATGCTGGGGCCCAGCGCTGACGGCGGCGCAGATTTAAGACCAAAGGGAAGGGGACGGCCGCAAAGGATCTTACTGGGCGTTTGGCCCGACGAGCACATTCGCGGCGTAATTCGCGCAGTTGTGTTCAGAGACACCCACGCGCCCTGCGCCACTCAGGCCACAAACCTTAAAGAGATCGAACTGCCCGGCTACCCTGCCATCGCACCGGACGGTGTGGCCGTTCAGAACGCTTACATCGGATGCGGCAACGGCCGCGAGGGCCGCATGTCTCCCAACGCCGCCGCTGCCGCCGCGGTGGCCGCCGTGGCGCACGGCCTGCGCCGCCAGATGTGCAACATGGTGGCAGGACAGCGGCCCCCCGACCACCCACCGCACCTGGGCCCGCCCATGCAGTCGTCACCGCAGCTCACGTCGCCGCTCTCCACTGGCCTGGAGTCTCCGCTGTGCTCGCCCCCGCCGCCCGGCCACGCGCTCGAGCCCGCCAAGCACACCGACCCGTTCCGCCCCTTCGCCTCACCGACAGACAGTCGCTACGGCGACCGCGAGCCTACTTCTGACATCACTGAGATGGGACCGCCGAAGAACGGCCAAGGCCTCACCAGGAAGGGCCCCGGTCAAGGCGCATCGCCCTCTGAACTGGACACGGCCGATGGGCGCGCAGACATCTGA
Protein Sequence: MWQKCWNTQTLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPCATQATNLKEIELPGYPAIAPDGVAVQNAYIGCGNGREGRMSPNAAAAAAVAAVAHGLRRQMCNMVAGQRPPDHPPHLGPPMQSSPQLTSPLSTGLESPLCSPPPPGHALEPAKHTDPFRPFASPTDSRYGDREPTSDITEMGPPKNGQGLTRKGPGQGASPSELDTADGRADI

Sequence clustering based on sequence similarity using MMseqs2