Xruf026447.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:22469275-22470462[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.027 43 5.9 0.0 25 44 6 25 2 31 0.86 2 8 0.083 1.3e+02 4.3 0.2 20 44 35 59 27 68 0.85 3 8 0.00077 1.2 10.8 0.0 21 44 92 115 88 123 0.91 4 8 0.048 77 5.1 0.5 21 44 148 171 141 179 0.89 5 8 0.14 2.3e+02 3.6 0.1 22 45 177 200 172 204 0.88 6 8 0.006 9.7 8.0 0.5 21 45 204 228 201 237 0.88 7 8 3.5 5.6e+03 -0.9 0.1 22 43 233 254 226 263 0.70 8 8 0.34 5.5e+02 2.3 0.1 22 44 261 283 257 288 0.81
Sequence Information
- Coding Sequence
- ATGGAAGAAAAGCATTACAAGTGTGAGATTTGCAAGAAAGTGTTCGGACTATTAAAGAATTTAAAGCGGCATATGTTGACGCATGCTGACAATAGGTCCGTGAAAATTGAAACGccatacaaatgtgaaatttgtcaaaaagtgTTTGGGCGGCGTTACGTGTTAGCAAGACACATTACCTCTCATACTGGAGAAAGACCTTTTGAGTGCGAAGAGTGCGGTAAATGTTTTAGAGAAAATTCCAAGCGTATAAGTCACATGAAGATCCACACAGGTGAGAAGCCTTACGTTTGCAAGATTTGCAAGAAAGCATTTGCAAAATCAAACAATTTGACAAGACACATGGTAACGCACACCAATGAAGCACCGTACAAATGTGAactttgccagaaagcattcgcTGGTCCGTACTTGTTAAACAGGCACATTATTACTCATACGGGagaaaggcctcacaaatgtgaaatttgccagaaagggTTCGCCGATCGTTCTGCTTTAAGGAGACACGTTGTGACTCACACGACACAGAGACCTTACGAGTGCGAGATATGCAAAAAGGAGTTGGTTAGCTCAAGCTCTTTAAATAGACACATGATGATGCACACCAATGAAGCAccatacaaatgtgaaatttgccaaaaagtgtTATTGCAGCGTTCCAGTTTAGTGAGACACATTAGGACACATTCGGGACAGAGACCTTTCGAATGCGAAATTTGCAAGAAAACATTCGGGGAGTTTACCACTTTAAAGATGCATATGTTGGTGCACAGCACAGACACTCCGTACAAGTGTGCAATTTGTCAAATAGGATTCGCACGGCAAAATGGGTTGTCAAGACACCTTGGGACCCATGCGTCTGAAACGTTCGGGCAGTTTAACTCTTTAACCGGTCATTTGTTGACGTGCACCGACAACAAAGAAGAAAATCCTGaaaagcttataaaaaatgaagaaTATGAGGTGAGATATGAAAATAGTGTTAGTGTAAAATTAGAACAGGATACAACAGATGAAGAAAGTCCAGTTGTAGAGTCCGAAAATTTTGAACAGCTTATCAAATGTAATAATAGTGTTTGGGTTAAAGAGAATATTTTAGATGCTGGAAACTTTTcaaaacttttcaaaaatgaaGATTGCGAGGTGAAAGACGAAAATTGTAGAAAGTGGACCTTTAAAGAATAG
- Protein Sequence
- MEEKHYKCEICKKVFGLLKNLKRHMLTHADNRSVKIETPYKCEICQKVFGRRYVLARHITSHTGERPFECEECGKCFRENSKRISHMKIHTGEKPYVCKICKKAFAKSNNLTRHMVTHTNEAPYKCELCQKAFAGPYLLNRHIITHTGERPHKCEICQKGFADRSALRRHVVTHTTQRPYECEICKKELVSSSSLNRHMMMHTNEAPYKCEICQKVLLQRSSLVRHIRTHSGQRPFECEICKKTFGEFTTLKMHMLVHSTDTPYKCAICQIGFARQNGLSRHLGTHASETFGQFNSLTGHLLTCTDNKEENPEKLIKNEEYEVRYENSVSVKLEQDTTDEESPVVESENFEQLIKCNNSVWVKENILDAGNFSKLFKNEDCEVKDENCRKWTFKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536883;
- 90% Identity
- iTF_01536883;
- 80% Identity
- iTF_01536883;