Xruf043447.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26205325-26206576[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.067 1.1e+02 4.6 0.1 26 48 27 49 19 54 0.83 2 9 0.071 1.1e+02 4.5 0.1 22 44 51 73 48 77 0.89 3 9 0.1 1.6e+02 4.0 0.3 21 44 78 101 74 105 0.90 4 9 1.4e-05 0.023 16.4 0.1 21 44 106 129 103 136 0.91 5 9 0.024 39 6.0 0.3 22 47 138 163 133 168 0.71 6 9 0.043 70 5.2 0.0 19 44 163 188 149 193 0.84 7 9 3.4 5.4e+03 -0.8 0.1 11 46 223 253 214 261 0.66 8 9 0.16 2.5e+02 3.4 0.3 21 44 256 279 253 283 0.88 9 9 0.36 5.8e+02 2.3 0.1 20 46 316 342 294 345 0.72
Sequence Information
- Coding Sequence
- ATGGAAGAACAATTTGTTGCAGACGAAGGAGAGTCGGAAATTCTTgaagtaaaacaagaaaatgtCTCGAACCAGTTTGAATGTCCCGATTGTTCGAAAGTATACAGAAGCATCCGCGGGTTAGAATTGCATTTGTTGATGCATGCGGGCCAAAAACCATATAAATGCGAGATATGCGGCAAAGCGTTCCTTCAATCGCAACACCTAAAGACTCATATTATGTGCCATACGGGCGAGAGGCCCTACGAATGCGATATATGTGAAAAATCATTTCGTCATTCTTCGCATCTAGCCTGCCACATGCTGGGGCACACGGGAGAGAAGCCTTACACTTGCGAGATATGCAAGAAAGGTTTCCGTCAGTCCCATCATCTAAAGAGACACACAATGAGCCACATGATTGAAGTAGAAGAAGGTCCCTTCACATGTCCCATCTGTTCGGAAACGTTCTTTACTCCAGAGACCATCAAAGGCCACGCTCAACTCCATAAGAGCGAGAAACCGTACGAATGTACGGTTTGTAAAAAGTGTTTTCCGCTGCGCGGAAATCTCAAAAAACACATGTTCACTCATACCGGAGAAAAACGGTTCGAATGTCACATTTGCGGAAGAAAGTTATCATACAAAGATTGCTTATTAAAACACTTGAAATGGCACGAGAGAAAAGGTGAcgaaaaaccaaaaaagacGTCGTACGATTGTTCATATTGTTCGAAAACGTTTACTACACCCTCGAATTTAAAGTTGCACCTTTTGATCCATACGGACGAGAAGCCTCATCAGTGCCAGTTATGCGCAAAGAGTTTTCGACAACGTGTACACCTCGAAACTCACATGTCCACTCATACCAAAGAAATATCGGTCAAACTTCACCAGTTCAAAAAAGGAACTGCTTCTAAACCTCGTGGAAAAACAGATAGTAGTCGTTCGAGTTTAAGCACACATTTATGCGAGAGAAAGTATCAGTGCCAGTTGTGCAAGAAGAACTTCGATCGGAAGTTTAATTTCAACAGACATTTGAAGCTTCATGGAACGGAAGAATATGTCTTAGGGCCTGAATCAGATCTCCCCGTGTTAGAAGGGTCGATTCATTTtgaggaaattaaaattgatgaAAGCGTAAAAAAGGAAATCGATCTTGAATCAGAATTTAATGCAGATGACCCTCTTGTCGTTCACGGGGATAGAATAGAAtag
- Protein Sequence
- MEEQFVADEGESEILEVKQENVSNQFECPDCSKVYRSIRGLELHLLMHAGQKPYKCEICGKAFLQSQHLKTHIMCHTGERPYECDICEKSFRHSSHLACHMLGHTGEKPYTCEICKKGFRQSHHLKRHTMSHMIEVEEGPFTCPICSETFFTPETIKGHAQLHKSEKPYECTVCKKCFPLRGNLKKHMFTHTGEKRFECHICGRKLSYKDCLLKHLKWHERKGDEKPKKTSYDCSYCSKTFTTPSNLKLHLLIHTDEKPHQCQLCAKSFRQRVHLETHMSTHTKEISVKLHQFKKGTASKPRGKTDSSRSSLSTHLCERKYQCQLCKKNFDRKFNFNRHLKLHGTEEYVLGPESDLPVLEGSIHFEEIKIDESVKKEIDLESEFNADDPLVVHGDRIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536933;
- 90% Identity
- iTF_01536933;
- 80% Identity
- iTF_01536933;