Xruf043446.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26192924-26194222[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.39 6.3e+02 2.2 0.1 21 44 47 70 36 82 0.83 2 11 9.9 1.6e+04 -2.3 0.0 26 44 80 98 75 103 0.79 3 11 3.3e-05 0.053 15.2 0.5 20 48 102 129 98 132 0.91 4 11 0.0059 9.6 8.0 0.2 18 47 128 157 127 163 0.88 5 11 1.6 2.6e+03 0.2 0.1 21 44 159 182 156 185 0.82 6 11 0.00049 0.78 11.5 0.2 18 44 183 210 167 214 0.78 7 11 0.00011 0.17 13.6 0.3 21 50 215 243 212 247 0.91 8 11 1.6 2.6e+03 0.2 0.3 15 44 262 294 253 298 0.52 9 11 0.017 27 6.5 0.6 21 44 299 322 295 329 0.92 10 11 0.66 1.1e+03 1.4 0.0 26 43 331 348 327 356 0.87 11 11 0.6 9.6e+02 1.6 0.4 26 45 359 378 354 384 0.85
Sequence Information
- Coding Sequence
- atgGAGATAGACGATAAGTTTATTATAAACAAAGAAGAGCCGATAAATGAGCCAGATTTTCGTGTAGAAACCAAAAAAACTGAGATTTTCAGCAATATAAGTGACGACAAAAATGAAAGTGGATCAAAGAAAACGCTTAAAGAAAAAGGTGTACGATGTCCCGATTGTCTGAAAGTTTACGCGAGCAAGCAGAGTTTAAGAGTGCATTCGTCAATTCATACGGGCATAAAAGAACACATTTGTAAGATTTGCAAAAAAGCGTTCCGTGTGGAAAATTATTTGACGGTCCACATGAGGTTCCACAAGAATGAGAAGCCtcacaaatgcgaaatttgcgGAAAAGATTTCCGTCAGTCCCAGTGTTTAAGGAGTCACTTGTTGCGTCACACTAACGAACGGCCCTACAAGTGCGGGATATGTAAAAACGAGTTCCGTCAGGTGTCGCATCTAAAGTTTCACATGATCTTGCACAGCGATGAGCGGCCGTACAAATGCGAGGTATGTAAAAAAGCGTTCCGTGCGCCGCACTATCTAGAGGTTCACATGAGGTCCCACACAGACGAGAGGCCGTACGTTTGCGACATATGCGAGAAAGGGTTTCGGCAAGAAGCGACTCTAAAACGTCACGTAATGTGGCatacaggcgaaaagccccacaaatgcggAATATGCGAAATGGCGTTCCGCCAGAGCTACACTTTCAAGTGCCATTTAATGCGCCATTTCGACCAGAGACCTTGCGAAAGTGAATTTTATGAAAAAGACACTCCGAGTGGAAATCGTCACCAATTGCGCACTCAAAGCGAGTCTGAACCGGTAAAAGACGATCCTtacaaatgttcaaattgttcGAAAAGATTTGTTAATCTGAGAAAGCATATTTTGATCTGCACTAACGAACGACCTCATAAGTGCGAGGTTTGCAAAAGAGGTTTCCGACAACCTAATCACCTCGCGAGACATATTTCAACTCCTTGTGGCGCATCGTACGCTTGCTCCATTTGTTCGAAGACGTTTACTATGCTGTCGAATTTGAAACGTCACAATTTGACTCATACAGACGATAAACTGCATCAGTGCCAGTTATGTACGAAAAGCTTTTGTAGGAAGGCTAATCTCCAAAGGCATTTGAAGAGTCATGATTCTAAGAGAAGGAAAGTTGATGTACAATTAAGAACTGAATCGGGTACTGCAGCAGTTAAGGTTGATAAAGATTTGAAGAGAGAATcggaataa
- Protein Sequence
- MEIDDKFIINKEEPINEPDFRVETKKTEIFSNISDDKNESGSKKTLKEKGVRCPDCLKVYASKQSLRVHSSIHTGIKEHICKICKKAFRVENYLTVHMRFHKNEKPHKCEICGKDFRQSQCLRSHLLRHTNERPYKCGICKNEFRQVSHLKFHMILHSDERPYKCEVCKKAFRAPHYLEVHMRSHTDERPYVCDICEKGFRQEATLKRHVMWHTGEKPHKCGICEMAFRQSYTFKCHLMRHFDQRPCESEFYEKDTPSGNRHQLRTQSESEPVKDDPYKCSNCSKRFVNLRKHILICTNERPHKCEVCKRGFRQPNHLARHISTPCGASYACSICSKTFTMLSNLKRHNLTHTDDKLHQCQLCTKSFCRKANLQRHLKSHDSKRRKVDVQLRTESGTAAVKVDKDLKRESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -