Xruf043556.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26712085-26713338[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4 5.4e+03 -0.8 0.0 25 47 64 86 51 91 0.67 2 12 0.02 32 6.3 0.2 21 44 88 111 84 119 0.87 3 12 0.27 4.4e+02 2.7 0.4 21 45 116 140 113 147 0.86 4 12 0.23 3.8e+02 2.9 0.1 21 44 144 167 140 171 0.89 5 12 6.1e-05 0.099 14.3 0.4 21 44 172 195 169 200 0.92 6 12 7.8e-06 0.013 17.2 0.4 21 52 200 231 198 231 0.90 7 12 0.0076 12 7.6 0.2 21 45 228 252 226 259 0.87 8 12 0.27 4.3e+02 2.7 0.1 21 48 256 282 252 284 0.86 9 12 0.028 45 5.8 0.2 18 44 281 307 279 311 0.90 10 12 0.0077 12 7.6 0.6 21 48 312 338 309 344 0.87 11 12 0.35 5.7e+02 2.3 0.4 18 45 337 364 336 372 0.76 12 12 1.4 2.2e+03 0.4 0.7 20 43 367 390 349 397 0.77
Sequence Information
- Coding Sequence
- ATGTCTTATTACGATACACTTAAATCtgaagttaatattgaagtggaaGAAAAATACACAGTTTCCAAACAATCGGTTGTCAAATCAGATTTTTGCGAAGAAAACGCTAAGGTAGAGATTTTttctaatataaataatattgaaataaaaactgAAGTCGCAGAAAAAAGAGAACACAATGCAAACGAATTCAAATGTCCCGACTGCCCGAAAGTCTTCGCCTGCATCGACGGTCTAAAAGGCCATCTAACGATGCATACCGgtgagaagccccacaaatgcgaGATATGCAGTCAAGCGTTCCGTCTGCCCCTAACTCTGAAGCGTCACATtttgtgccacacaggcgagaagccctaCAAATGCAAAACTTGTAATAAAACGTTCCGCCACCACGTCCATCTGAGAGATCACATGATGTGCCATACCCATGAGAGGCCTTacgaatgtgaaatatgtaaaaaaacgTATCCTCTGGCGCAGAATCTAAAAACCCATATGATGTATCACACAGATGAGAGGccttacaaatgcgagatatgcTATAAAGCGTTCTGCCAGCTCTCGAATTTAAAGCGTCACATGATGTGCCATACCGGCGAGAGGCCTCACAAATGCGAGATATGTAAAGCAGCGTACCGTCAGAATTCAACTTTAAAGCGCCATATGATGTTGCACACGaacgaaaagccccacaaatgtgatgTGTGTAATAAAATATTCTGTCAACTTTCAAGCTTAAAGCGTCACATGATGTGCCATACGGgagagaagccccacaaatgcaAAATATGCGATAAAGCGTTCTGCGAGACATCAACTCTAAAGGATCACATGCTGCGCCACTCAGATGAGAGACCGCATATATGCGAAATGTGTAACAAAGCGTATCGTACAGCACTGGGACTAAAGCGTCACATGCTGTGCCACACAGACGAGAAGCCACATAGCTGCCGAGTGTGTAAAGAGGCGTTCCGTCGGCTGTCGACTCTAAAACGTCATATGATGCGCCATTCAGGCGAAAAACCCCACAACTGCCAAATATGTAAGAAAGCGTTCTGTTTACCCCAAACGCTAAAAGACCACATGACATGCCACACGAATGAGAAGCCTTATAAATGTGATTTTTGTGGGAGATGTACTCGAACCAGGGGTTCGTTGAAAAAGCACAGTCTAGTTCACACTACTcgtaataatttgtaa
- Protein Sequence
- MSYYDTLKSEVNIEVEEKYTVSKQSVVKSDFCEENAKVEIFSNINNIEIKTEVAEKREHNANEFKCPDCPKVFACIDGLKGHLTMHTGEKPHKCEICSQAFRLPLTLKRHILCHTGEKPYKCKTCNKTFRHHVHLRDHMMCHTHERPYECEICKKTYPLAQNLKTHMMYHTDERPYKCEICYKAFCQLSNLKRHMMCHTGERPHKCEICKAAYRQNSTLKRHMMLHTNEKPHKCDVCNKIFCQLSSLKRHMMCHTGEKPHKCKICDKAFCETSTLKDHMLRHSDERPHICEMCNKAYRTALGLKRHMLCHTDEKPHSCRVCKEAFRRLSTLKRHMMRHSGEKPHNCQICKKAFCLPQTLKDHMTCHTNEKPYKCDFCGRCTRTRGSLKKHSLVHTTRNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536952;
- 90% Identity
- iTF_01536952;
- 80% Identity
- iTF_01536952;