Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014503.1:19000348-19006559[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.15 2.3e+02 3.5 0.0 25 45 71 91 57 94 0.83

2 15 4.8 7.8e+03 -1.3 0.0 26 45 134 153 122 156 0.85

3 15 0.71 1.1e+03 1.3 0.1 21 44 157 180 153 187 0.84

4 15 0.4 6.4e+02 2.1 0.6 23 44 188 209 181 214 0.89

5 15 0.021 33 6.2 0.4 22 44 215 237 212 246 0.89

6 15 0.076 1.2e+02 4.4 0.1 22 44 271 293 266 297 0.88

7 15 0.029 47 5.8 0.4 21 44 298 321 295 327 0.90

8 15 0.73 1.2e+03 1.3 0.1 22 46 327 351 324 357 0.82

9 15 0.34 5.6e+02 2.3 0.2 26 46 445 465 440 468 0.91

10 15 0.0025 4 9.2 0.1 21 43 468 490 465 495 0.91

11 15 0.051 82 5.0 0.3 21 45 496 520 492 527 0.85

12 15 0.00049 0.79 11.4 0.4 21 52 524 555 521 557 0.91

13 15 0.003 4.8 8.9 1.1 21 43 580 602 577 607 0.92

14 15 0.02 32 6.3 0.6 21 44 608 631 603 635 0.88

15 15 0.0019 3.1 9.5 0.3 21 44 636 659 632 666 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.15	2.3e+02	3.5	0.0	25	45	71	91	57	94	0.83
2	15	4.8	7.8e+03	-1.3	0.0	26	45	134	153	122	156	0.85
3	15	0.71	1.1e+03	1.3	0.1	21	44	157	180	153	187	0.84
4	15	0.4	6.4e+02	2.1	0.6	23	44	188	209	181	214	0.89
5	15	0.021	33	6.2	0.4	22	44	215	237	212	246	0.89
6	15	0.076	1.2e+02	4.4	0.1	22	44	271	293	266	297	0.88
7	15	0.029	47	5.8	0.4	21	44	298	321	295	327	0.90
8	15	0.73	1.2e+03	1.3	0.1	22	46	327	351	324	357	0.82
9	15	0.34	5.6e+02	2.3	0.2	26	46	445	465	440	468	0.91
10	15	0.0025	4	9.2	0.1	21	43	468	490	465	495	0.91
11	15	0.051	82	5.0	0.3	21	45	496	520	492	527	0.85
12	15	0.00049	0.79	11.4	0.4	21	52	524	555	521	557	0.91
13	15	0.003	4.8	8.9	1.1	21	43	580	602	577	607	0.92
14	15	0.02	32	6.3	0.6	21	44	608	631	603	635	0.88
15	15	0.0019	3.1	9.5	0.3	21	44	636	659	632	666	0.90

Sequence Information

Coding Sequence: atgtcCTCTTGTGATGTAgttaaaactgaattaaaaTATGAAGTGGATGAAATAGAGACGGAAGAAAACTTTGTAATTAGCGAAGGGTTGCTAACGGTGTCAAATATAGAATCGGAAGACAAACAGGCAGAAATTTCCTTTCATATAAATAATGAAGAAGTCAAGATTGAACCAGCGGAAACCCGTAAAGATGAAGAAACCTCAAACAAGTTGAAATGTCCAGATTGCCCAAAAGTATTCCGCCGCAAGGACTTTTTCAAACGGCATTTGAAAACGCACACGGAAGAAGAAAACTTGAACCAATTGAAATGTCCCGATTGCCCAAAAGTCTTCCTCCGCAAGGACTCGATGAAGCGACATTCTAAAACTCATATGAATAACGAAAACTCGAAGAAATTTGAATGTCCCGATTGTTTAAAAATCTTCCGCCTCAAGGACTCGTTCAAGATGCATTTGAAaactcacacaggagaaagaCCGCATGAATGTGAAGTATGTGAAAAAGCGTTCCTTCGGCCCGCAGATCTGAAGCGTCATGTGATGTGTCATACGGCGGACGGGAGACCCCACAAATGCGAAATATGTAACAGTAGGTTCAGTCAGATCGTGTATCTGAAGCGACATGTGCTGTGTCACACAGACGAGAGGCCccataaatgtgaaatatgtgaaAAAACATTTCGCCTGCCTTTAACACTGAGGCGTCACGTAATGTCTCACAAGAACATAAGACCttataaatgtgaaatatgtcggAAAGCCTTTACCCGCGCCGAAATCCTAAAGGACCACATGATGTATCACAGTGACGACAGGCCCTACACATGTGAAATATGCAATAAAGCGTTCCATCAGTTATCCAGTTTAAAGAGCCACATAATGTACCACACCAACGAGCGACCCTGTAAATGTGAGATATGCGACAAAGCGTTTGTCCAGCACATACATTTAAAGCGTCACATGTTGTACCATACGAATGAAAGAGCCCATGAATGTGAAATGTGTAAGAAAGCGTTTGTTCTGCCCCATAATCTAAAGCGTCATATGAAAATCCACACCGCTGTTCACACAAACAAGGGTCCCCACGGATGCAAAATATGCCAAAAGATGTCTTTTTCTTTGAATCCAgttaaaactgaattaaaaAGTGATTGGGGCGAAATACAGATGGAAGAAAAATTTATAGTAAACGAAGGGTTGCTAACAGTGTCAAATATTGGATCAGATTTTTGTATTGAAGACAGAAAGGCAGAAAATTTTCGTAATATAAATAATGATGAAGCAAGAAATGAACCAACAGAAACTGTTACAGAAAATGACTCGAACAGATTTGAATGTCCCGATTGTCGAAAAGTCTTCGCCTGTAATTATGCACTCAAACGACATTTGAAAATACATACAGATGAAAGACCGTACATTTGCCAAATATGTAAGAAAACGTTCCGTAAGAGTTCAAATCTAAAGGACCATACGATGTGCCACACCGGTGAAAGGCcccacaaatgcgaaatttgtaACAAAGCGTTCCGCCAGCACGCACATTTGGTGGGCCATATGATGTGCCATACAAATGAGAAGCCTCAGAAGTGCGAATTATGTAATAGAGCGTTCCGTCAAACGGCAACTTTAAAGCGTCATATGGTGTGGCATGCAGAGGCAAAGCCCTACGAGTGTGAAATATGTAGCAAGATGTTCGGTCAGCTATCGACTCTGCAGGGCCACATGTTGTGGCATACAGATGAGAGACCGCACGTTtgtgaaatatgtaataaaGCATTCCGTCGATCTTCGGCGTTAAAACGTCATAGAAGGTGTCACACGGATGAGCGGCCCtataaatgtgaaatatgtaataaaCTGTTCCGGCGGTCTTCGACTCTGAAAATCCATATAATGTGTCATACAGGTGAAAGACCCCACAAGTGTGAGATATGCCAAAAAGCATTCCGTCAGTCCGCAACGCTAAAGGACCATGTGATGTGCCATACAGATGCTCGCATCGTAGATGTGAACTTTGAGGAGAACACACTGAGAGTGATCCATGGTCGAGAGAAATTAGAATAG
Protein Sequence: MSSCDVVKTELKYEVDEIETEENFVISEGLLTVSNIESEDKQAEISFHINNEEVKIEPAETRKDEETSNKLKCPDCPKVFRRKDFFKRHLKTHTEEENLNQLKCPDCPKVFLRKDSMKRHSKTHMNNENSKKFECPDCLKIFRLKDSFKMHLKTHTGERPHECEVCEKAFLRPADLKRHVMCHTADGRPHKCEICNSRFSQIVYLKRHVLCHTDERPHKCEICEKTFRLPLTLRRHVMSHKNIRPYKCEICRKAFTRAEILKDHMMYHSDDRPYTCEICNKAFHQLSSLKSHIMYHTNERPCKCEICDKAFVQHIHLKRHMLYHTNERAHECEMCKKAFVLPHNLKRHMKIHTAVHTNKGPHGCKICQKMSFSLNPVKTELKSDWGEIQMEEKFIVNEGLLTVSNIGSDFCIEDRKAENFRNINNDEARNEPTETVTENDSNRFECPDCRKVFACNYALKRHLKIHTDERPYICQICKKTFRKSSNLKDHTMCHTGERPHKCEICNKAFRQHAHLVGHMMCHTNEKPQKCELCNRAFRQTATLKRHMVWHAEAKPYECEICSKMFGQLSTLQGHMLWHTDERPHVCEICNKAFRRSSALKRHRRCHTDERPYKCEICNKLFRRSSTLKIHIMCHTGERPHKCEICQKAFRQSATLKDHVMCHTDARIVDVNFEENTLRVIHGREKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01536853;
90% Identity: iTF_01536853;
80% Identity: iTF_01536853;