Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014502.1:26418115-26419858[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2 6.8e+03 -1.2 0.0 15 45 52 82 48 88 0.79

2 14 0.0026 4.1 9.1 0.2 26 44 91 109 85 114 0.90

3 14 0.086 1.4e+02 4.3 0.3 20 44 113 137 111 142 0.89

4 14 0.015 23 6.7 0.0 21 48 142 168 139 172 0.88

5 14 0.03 48 5.7 0.0 23 44 174 195 170 201 0.87

6 14 0.038 61 5.4 0.2 25 44 204 223 198 228 0.87

7 14 0.033 52 5.6 0.3 21 48 228 254 224 260 0.87

8 14 0.25 4.1e+02 2.8 0.1 21 46 285 310 272 316 0.80

9 14 0.1 1.6e+02 4.0 0.0 21 44 313 336 309 341 0.90

10 14 0.33 5.3e+02 2.4 0.0 23 45 350 372 347 380 0.87

11 14 3.6 5.7e+03 -0.9 0.1 21 40 376 395 373 403 0.79

12 14 1.4 2.3e+03 0.4 0.1 21 44 404 427 400 432 0.87

13 14 0.36 5.8e+02 2.3 0.1 26 44 473 491 453 495 0.85

14 14 0.0028 4.5 9.0 0.0 21 47 496 522 493 526 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2	6.8e+03	-1.2	0.0	15	45	52	82	48	88	0.79
2	14	0.0026	4.1	9.1	0.2	26	44	91	109	85	114	0.90
3	14	0.086	1.4e+02	4.3	0.3	20	44	113	137	111	142	0.89
4	14	0.015	23	6.7	0.0	21	48	142	168	139	172	0.88
5	14	0.03	48	5.7	0.0	23	44	174	195	170	201	0.87
6	14	0.038	61	5.4	0.2	25	44	204	223	198	228	0.87
7	14	0.033	52	5.6	0.3	21	48	228	254	224	260	0.87
8	14	0.25	4.1e+02	2.8	0.1	21	46	285	310	272	316	0.80
9	14	0.1	1.6e+02	4.0	0.0	21	44	313	336	309	341	0.90
10	14	0.33	5.3e+02	2.4	0.0	23	45	350	372	347	380	0.87
11	14	3.6	5.7e+03	-0.9	0.1	21	40	376	395	373	403	0.79
12	14	1.4	2.3e+03	0.4	0.1	21	44	404	427	400	432	0.87
13	14	0.36	5.8e+02	2.3	0.1	26	44	473	491	453	495	0.85
14	14	0.0028	4.5	9.0	0.0	21	47	496	522	493	526	0.92

Sequence Information

Coding Sequence: ATGTCTTTTTGCGATCCAGTTAAATCTGAAATAAAATTAGAGgtagaagaaaaatttatagTCGAAGAACAGACGATACAAGAGTCATTTGGGGAGTCAGATGTTTATATAGAAAACAAGGCAAATGTAAACGCCCAAATAAAAAATGAAGCGACAAGGAGAAGAGGAAGAGAAGCGAAGGAATTCAAATGTTCCGATTGTCGGAAAGTTTTCACCACCAACTACGGGTTAAAAAAGCATTTGTTAATACACACCGATAAGAAACTGCTAAAATGCAAAATATGTGAAAGTGCATTTCGTCATTCCCGCAGCCTAAATCGCCATATGATGAGCCACAAGGCAGAGAGACCACAcgtatgtgaaatatgtaaaatagCGTACCGCTTTCCCCAGCATTTAAAGAACCATATGTTAACGCACACTGGCGAGAAGCCCCACGTATGCGAAGTGTGTAAAAAAGCTTTTCGTTGGCCCCAGAATTTAAAGGAGCATATGTTGCAGCACATGGGTGAGGACGCCCAGAAGATCAAATGTCCCATTTGTCCGAAAGTCTTCACCAAGAAGAGCAGTTTAAAATCTCACTtattagtacatacaggtgaaaAATTACACAGATGCAAGATATGTAAGAGGGGGTTCAGTCATTCCCAAAATTTAACGCGGCACTTGGTGAGCCACACGAAGGAGAGACCTCAcgtatgtaaaatatgtaataagGCCTTCCGTCTGCAAGACACTCTAAAAAAGCATATGGTGAGGCATACGCGTGAGAGAGCCAAGTTCAAGTGTCTCGTGTGCCAGAAAGTCTTCGGCACCAACGGCGAGTTAAAAGTACATTCGACGATCCATAGTGGTGAAAAGCCATATGTATGCGAGATATGCAAAAAGGCATTTCGCCTACCGTATTTGCTAAAGTCTCATATGAAGTGCCACACCGGTGAAAAGCCCTACGTATGCGAAATATGTAAAACAGCGTTCCGTTGGCTTCAAAGTCTAAAGACTCATATGGCAGAGCACGTGGGCCAAGAACCCAACAAGTTTAAAAGAAAACCATTTGAATGCCGGATATGTAAAAAGACGTTCCGTGACGCATATTCTCTAAAGGAACACATGATGTTCCACACTGACGAGagaccccacaaatgtgaccTATGCAGTAAAGCGTTCCGTCGGATGTCACATCTAATCAGTCACACGTTCTGCCACACGaacgagaagccccacaaatgcgaACTTTGCGAAGAAGCCTTCCGCCTACCCGCATATTTAAAGCATCACATGAAGCAGCATACGGGCGAGTCGGGACAGGTTAACGCAAGTTTCAGGTGCCGCTCCTGCGGAAAAAAGTTCTCCTCCGAACAGAGTTTGTCGAGACACATGCAAAATCATGAACAAAAGGCACCAAAGATGTCACACGTTTGCTCGGTTTGTTCGAAAACATTTACTCGCTCGCACAACTTAAAGACACATTTTTTGATTCACACGGGGGAGAAGCCCCATCAGTGTCAATTTTGCGCGAAGAGTTTTCGCTTTAAGAATAATCTCAAAAAGCATTTGAAGCTTCACAATACAGACAGAGAACCAGATATCCTCAAATCAGAGTCGTATAATGTTGTATTAGACGTGATTAAAGATGAGGAAATTCAAATTGATGATAGCGTAAAGAAAGAAAGTGACACTGAATTAGAATTTACTTGA
Protein Sequence: MSFCDPVKSEIKLEVEEKFIVEEQTIQESFGESDVYIENKANVNAQIKNEATRRRGREAKEFKCSDCRKVFTTNYGLKKHLLIHTDKKLLKCKICESAFRHSRSLNRHMMSHKAERPHVCEICKIAYRFPQHLKNHMLTHTGEKPHVCEVCKKAFRWPQNLKEHMLQHMGEDAQKIKCPICPKVFTKKSSLKSHLLVHTGEKLHRCKICKRGFSHSQNLTRHLVSHTKERPHVCKICNKAFRLQDTLKKHMVRHTRERAKFKCLVCQKVFGTNGELKVHSTIHSGEKPYVCEICKKAFRLPYLLKSHMKCHTGEKPYVCEICKTAFRWLQSLKTHMAEHVGQEPNKFKRKPFECRICKKTFRDAYSLKEHMMFHTDERPHKCDLCSKAFRRMSHLISHTFCHTNEKPHKCELCEEAFRLPAYLKHHMKQHTGESGQVNASFRCRSCGKKFSSEQSLSRHMQNHEQKAPKMSHVCSVCSKTFTRSHNLKTHFLIHTGEKPHQCQFCAKSFRFKNNLKKHLKLHNTDREPDILKSESYNVVLDVIKDEEIQIDDSVKKESDTELEFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01536858;
90% Identity: iTF_01536858;
80% Identity: iTF_01536858;