Xruf043538.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26643029-26644654[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.4 1e+04 -1.7 0.0 27 46 48 67 45 70 0.82 2 13 0.0032 5.1 8.9 0.0 21 44 70 93 62 97 0.90 3 13 0.017 27 6.6 0.1 21 44 98 121 95 126 0.90 4 13 0.00025 0.4 12.4 0.1 21 45 126 150 123 153 0.91 5 13 0.082 1.3e+02 4.3 0.2 24 45 157 178 150 185 0.83 6 13 0.00039 0.63 11.8 0.8 22 44 183 205 178 209 0.87 7 13 5.5 8.8e+03 -1.5 0.1 24 44 213 233 206 237 0.81 8 13 0.0063 10 7.9 0.0 21 48 238 265 234 268 0.92 9 13 0.31 5e+02 2.5 0.5 22 48 268 294 265 298 0.84 10 13 0.075 1.2e+02 4.5 4.3 8 45 281 319 275 329 0.78 11 13 3.3 5.4e+03 -0.8 0.1 18 43 320 345 318 354 0.75 12 13 0.88 1.4e+03 1.0 0.2 23 31 364 372 350 384 0.84 13 13 0.089 1.4e+02 4.2 0.2 21 45 387 411 383 420 0.85
Sequence Information
- Coding Sequence
- atgtctttttgcgGTCCAGTTaaaacagaattaaaaataGAGACGgaagaaattattgtaaatgaACCAGTTGTCGTACAAGAAAATGTTTCCGACGAAATAAAAGATGAATTAATAGAAGACGGGACGAAAAAATTCAGATGCCCCGATTGTCCGAAAGTCTTCGCGCGCATCAGTGGGTTAAAAGCGCATTTGTCGATACACACCGGTGAAAAACCGCACAAATGCGACATGTGTAATAAAACGTTCCGAGCGTCGTATTCTCTGAAACGCCACGTGATGTACCACACAGACGAGCGACCGTACAAATGCGAAGTGTGTAAAAAAGCGTTCCGCGAGTCCGCAAATCTAATCGATCACATGCTGTGTCACACGGGTGAGAAGCCCTACAAGTGTGAAATATGCACAAAAGCGTTCCGTCAGTCTGGGCAACTCAGAGGTCATATGAAGTGTCACTCGGGAGAAGAGCGCTACAAATGCAAGGTATGCCAAGCAGCTTTCTCTCAGCCGTCAACTCTAAGACATCATATGGGAAGTCATTCAGACAAGAAGCCACACAGTTGCAACGTCTGTCACAAAGTGTTTCGTCAGAACTGTGCTTTAACGCGTCACATGGTGTGCCACACGAATGAAAGACGCTACGAATGTGAATTGTGTAACAAGGCGTTCCGTCAGTTAGCCCATCTAACTGGGCACATGATGTGCCACACGGGCGAGACGCCCTACAAGTGCGAAATGTGCGATAAGGCGTTCCGAAAGACTTCAAATTTGAAGGTTCACATGATGATGCACCACACAGACGAGATGCCTTACAAATGCGAAACATGTCAGAGATCGTTCCATCAGCACATCACTCTGAAGCGTCATATGACGAGCCACTCATACGAGAGACCGtacaagtgtgaaatatgtCCGAAAGCGTTCCGTCAAGCATCGCATCTAACCAGTCATGTGAAGCGCCACTCAGACGAGAGACCtttcaaatgcaaaatgtgCGAAAAGGCGTTCTGCCATAATTCGTATTTGAAGGCCCATATGGTATGTCACAAGGACAAAAGCGGCTCAGAACTGACTGGAGGGAACGAAAGAGATCCTTTTAAATGTCCCATCTGTTCGAAAAGAGTCACTCATCTGAAAGACCACATGATGACCCACACAGACGAGAGGCCCCACGAATGCGGAATATGTAAAAGACGTTTCCGGCAACGCGGAGCTCTCACGAGCCACATAATGACTCATACCGGGGAGAAACCTTTCGAATGTCAGTTGTGCGGGAAAGGGACCACCTTCAAATCGGACATGTTAAGGCACATGAAGGTTCATGACAGAAAAGGTGGTGGCAAGGCGAAGAAGGAACAATGCGTTGAAGGCGACAATtttttgaaacaagaaaaacagcTACTTTAG
- Protein Sequence
- MSFCGPVKTELKIETEEIIVNEPVVVQENVSDEIKDELIEDGTKKFRCPDCPKVFARISGLKAHLSIHTGEKPHKCDMCNKTFRASYSLKRHVMYHTDERPYKCEVCKKAFRESANLIDHMLCHTGEKPYKCEICTKAFRQSGQLRGHMKCHSGEERYKCKVCQAAFSQPSTLRHHMGSHSDKKPHSCNVCHKVFRQNCALTRHMVCHTNERRYECELCNKAFRQLAHLTGHMMCHTGETPYKCEMCDKAFRKTSNLKVHMMMHHTDEMPYKCETCQRSFHQHITLKRHMTSHSYERPYKCEICPKAFRQASHLTSHVKRHSDERPFKCKMCEKAFCHNSYLKAHMVCHKDKSGSELTGGNERDPFKCPICSKRVTHLKDHMMTHTDERPHECGICKRRFRQRGALTSHIMTHTGEKPFECQLCGKGTTFKSDMLRHMKVHDRKGGGKAKKEQCVEGDNFLKQEKQLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536869;
- 90% Identity
- iTF_01536869;
- 80% Identity
- iTF_01536869;