Xruf003009.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014492.1:24788956-24793881[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.051 82 5.0 0.1 26 52 50 76 39 78 0.86 2 15 0.48 7.6e+02 1.9 0.0 22 45 74 97 71 102 0.87 3 15 0.00038 0.62 11.8 0.0 26 52 106 132 99 134 0.88 4 15 2.1 3.4e+03 -0.2 0.0 23 46 131 154 128 157 0.87 5 15 1.8 2.9e+03 0.0 0.1 24 46 160 182 153 188 0.84 6 15 0.14 2.2e+02 3.6 0.0 23 44 187 208 181 216 0.88 7 15 5.3 8.6e+03 -1.5 0.0 24 45 216 237 208 241 0.76 8 15 0.0011 1.8 10.3 0.1 20 52 240 272 230 273 0.87 9 15 0.9 1.4e+03 1.0 0.0 22 52 270 300 267 301 0.85 10 15 0.12 2e+02 3.8 0.0 21 45 297 321 295 329 0.86 11 15 5.8 9.4e+03 -1.6 0.0 21 44 325 348 322 357 0.78 12 15 0.83 1.3e+03 1.1 0.0 21 52 353 384 342 385 0.83 13 15 0.063 1e+02 4.7 0.1 23 49 383 409 378 412 0.86 14 15 0.002 3.2 9.5 0.1 21 52 409 440 405 442 0.92 15 15 0.27 4.3e+02 2.7 0.2 23 47 439 463 435 468 0.87
Sequence Information
- Coding Sequence
- ATGGCAGAAACTAGTGATTTAGATGAAGAATTAAGTACTCTGGATATTAAGAACATAGTAATTAAGGAAGAGCATATTGTAGACGAAGAAAATATCAAAGATTTTTCCCCGGGAAAAAGTGAAAGTTTGCTTAAGAAGGGTAGTTTCAAATGTTTCTTTTGCGATAAGATTTTTACACAAAAACGATATTTACAACGCCACATTGTGATACACAATGATGATAAGCCGTTCGTCTGTGAAATTTGCAACAAAAGTTTCGCTCGGAAAATGAACTTACAATCGCACTATCAGATTCACACTGGAGAATATGGATTTGAATGCGAAATATGTAAGAAAAAATTCCGACAAAGCGGCAACTTGAAATTACACATGAATTtgcatacaggacaaaagccatATTCGTGTACTTTATGTGATGAACGCTTTAGTTGGAGCACACATTTAAAGTCGCACCTAAGAATGCACGAAGGTTTGTTGCCGTTTGAATGTCGAGTTTGCGGTGAGAGTTTTGAAAGACGAAATGCTTTACGGAATCATTTGAAAATTCACGATGGGAAGAATCCGTTTGAATGTAAAGTTTGTTCAGAGAATTTTAACGATAGTATGAACTTGAGAATGCATAAAAAAGAGCATACGGCGGAGAAATTGCATCAGTGCGGGACTTGTAAGAAGTACTTTAGTCGTGCTGCTGGTTTACAGAGACATTTGGCGACACACACAGCAGAGATGCCTTTCGAATGTGAGGTTTGTGAGAAGCGTTTCCGACACAGCAGCAACTTGAAACTACACCTAAAAATCCACTCTGGAGATAAACCATTCCAATGTGAACAGTGCAAGAAGTCGTTCACGCAAAACAGCACCTTGAAACAGCACATGAAAATTCATACCGGAGAAAAACCGTATGAATGCCACTTGTGCTTAAAAACATTCATCCAGATCAGCAACTTGAAATTACACATGAAAAATCATACGGGGGAAAAGCCCTATGAATGCCAGCTGTGCGAGAAGAAATTCCAAGAAAACAGCTCGTTGCAGTCGCATATTCGAAGCCACACCGGTGAGAAACCGTTTGAATGTGAGTTCTGCGGGAGAGCTTTCAACGATAACAGCACTTTAAAGTATCACTTGATGATCCATACCGGATCTAAACCATTTGAGTGCGAGGTTTGCCTGAAAAAGTTTAGACACAACAGTAACTTGGTGTCGCATTTAAGGATTCACACAGGGGAGAAGCCTTTTGCCTGTGAAGTTTGTGGAAAGACATTTAGGAAGAGTACCCATTTGAAGTCACACATGCGAACGCATACAGGGGCCAAACCTTACGAATGTTCTGTATGTAAGAGGAAGTTTAGTCAAAAGTGCAATTTGAATTCGCATTATAAACTGCACGAAGCAAAACAAGCAGAAGTAAATGGTTCATAA
- Protein Sequence
- MAETSDLDEELSTLDIKNIVIKEEHIVDEENIKDFSPGKSESLLKKGSFKCFFCDKIFTQKRYLQRHIVIHNDDKPFVCEICNKSFARKMNLQSHYQIHTGEYGFECEICKKKFRQSGNLKLHMNLHTGQKPYSCTLCDERFSWSTHLKSHLRMHEGLLPFECRVCGESFERRNALRNHLKIHDGKNPFECKVCSENFNDSMNLRMHKKEHTAEKLHQCGTCKKYFSRAAGLQRHLATHTAEMPFECEVCEKRFRHSSNLKLHLKIHSGDKPFQCEQCKKSFTQNSTLKQHMKIHTGEKPYECHLCLKTFIQISNLKLHMKNHTGEKPYECQLCEKKFQENSSLQSHIRSHTGEKPFECEFCGRAFNDNSTLKYHLMIHTGSKPFECEVCLKKFRHNSNLVSHLRIHTGEKPFACEVCGKTFRKSTHLKSHMRTHTGAKPYECSVCKRKFSQKCNLNSHYKLHEAKQAEVNGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536844;
- 90% Identity
- iTF_01536844;
- 80% Identity
- iTF_01536844;