Xruf043485.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26407852-26414238[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.016 26 6.6 0.4 21 45 219 243 211 250 0.88 2 9 0.0046 7.4 8.3 0.2 22 45 248 271 244 280 0.83 3 9 0.2 3.2e+02 3.1 0.0 21 44 341 364 332 368 0.89 4 9 0.41 6.7e+02 2.1 0.1 21 44 369 392 364 396 0.88 5 9 0.00032 0.52 12.0 0.2 21 44 397 420 393 424 0.92 6 9 0.00011 0.17 13.6 0.0 20 44 424 448 421 452 0.93 7 9 0.003 4.8 8.9 0.1 20 44 452 476 449 485 0.85 8 9 1.2 1.9e+03 0.6 0.2 23 44 483 504 478 508 0.87 9 9 0.47 7.5e+02 1.9 1.9 21 51 509 539 490 543 0.82
Sequence Information
- Coding Sequence
- ATGACGAACTGTTGCGTGTTTGGATGCAACAATAACTACAAGAACTCTAAAGAAACACTACATAGATTCCCCGCTCGAGATAAAGAGCCAGAACGATACAAAGCGTGGAAAGAAAGAATTAACCGGAAGAATTTCGTTCCTACTAATAGAGCCCATCTTGTATGCAGCGCCCATTTTACGGCCGACGATTTTCAGCATCTGTTGAAAGAGCAACTGCTGCCGCACGAGAAAATAAAAAGGCTGTTGAAAAAATCGTCGGTGCCTTCTCTATTTTTGGGCGGTTGTCGGTCGGAAATGGAAAAGACGAGATCGAAGAAATGCCTGgataagaaagaaatattcTTAGATCTTGCGTCTACATCAAAAGCCGACAACATTATAGAATTTATCGATTTTAAAACGGAAAGAaaaatgtctttttCGGAGCCGGTgaaatctgaaattaaaatcGAGATAGAAGAAAAATTTATCGTAGATGATGGTGGATCAATAGGAGAGTCAGTTGACGAAGAGATTTTTCCCgatgaaataaaaattgaaccAACGGAAGATCTCCGAAAAATACATGAAGTCGGGGTACGGCACAAATGCGGAATATGCGAAAGAACGTTCAGCTATCCGTATTTCCTAAAGCGACATATGACGAGCCACACGGACGAGAGGCCCCACAAATGCGAAATATGTGAAAAGGCGTTCCGCATTTCCCAACATCTGAGTCAACACATGAAATGTCACACGAATGAAAAGAGTCACAAATGCGATATATGCAAAAAAGCTTTCCGCACTTCCCAAAACCTAAATCAACATATGCTGTGCCATACGAAGGACAAACCTCATAAATGCGAAATATGCGAAAAAACAGAAATGTTTTGTAATGCGAATAACAGTGGAATACGAAGTGAACTCGAGGATACTGTTAAAGAAAAAGTCGGAAACGACGTAAATACAGTCAGATGTCCCGAATGCTTAAAAGTTTTCAGCAACATCTATGGTTTAAAGACCCACTCCACGATACATATTGGAGAGAAGCCCCATAAATGCGAGATATGTAAAAAGGCGTTCCGTCTGGTCCAAACCCTGAAGGTCCATATGATGTCTCACACGGGAGAGAGACCCTATAAGTGCGAGATCTGCAAGAAGGGCTTCCACATAGCCCAGCATCTAAGGAGTCACATGATGTGTCACACAGACGAGAAGCCCCACGTTTGCGAATTTTGTAAGAGAGCGTTCCGACAGTCCCAAAATTTAAAGAGTCACATGATGTGCCACACTTCCGAGAAACCGTACAAGTGCGACATTTGTAAGAAAGGCTTCCGGCAGTCGCAAACTCTGAAGAGCCATTTGATGTGTCACACGAGCGAGAGACCGTTCAAATGCGAAATTTGTAAAAAGGCGTTCCGCCAGGCCGGGCATCTCGCTAATCACATGATTCACCACATGGAGAAGAAGCCGTACGAGTGCGAAATTTGCAAACGGACGTTCCATCTCGCGAGGACTCTGAAGGTCCACGTGATGTGTCATACGGGAGAGACGCCGCACCTGTGCCACTTTTGCACCAAGGGCTTCCGTCGGAAGGACCATCTCAACACGCATTTGAAAAGGCATCATAAAGCCCAATCAAATGGAGTTATTAAAGTTGAGGAAATTCAAATCGATGAAAGTGTGAAAAAAGAGTACAATCCTGAATTAGAACTTCATCTgtaa
- Protein Sequence
- MTNCCVFGCNNNYKNSKETLHRFPARDKEPERYKAWKERINRKNFVPTNRAHLVCSAHFTADDFQHLLKEQLLPHEKIKRLLKKSSVPSLFLGGCRSEMEKTRSKKCLDKKEIFLDLASTSKADNIIEFIDFKTERKMSFSEPVKSEIKIEIEEKFIVDDGGSIGESVDEEIFPDEIKIEPTEDLRKIHEVGVRHKCGICERTFSYPYFLKRHMTSHTDERPHKCEICEKAFRISQHLSQHMKCHTNEKSHKCDICKKAFRTSQNLNQHMLCHTKDKPHKCEICEKTEMFCNANNSGIRSELEDTVKEKVGNDVNTVRCPECLKVFSNIYGLKTHSTIHIGEKPHKCEICKKAFRLVQTLKVHMMSHTGERPYKCEICKKGFHIAQHLRSHMMCHTDEKPHVCEFCKRAFRQSQNLKSHMMCHTSEKPYKCDICKKGFRQSQTLKSHLMCHTSERPFKCEICKKAFRQAGHLANHMIHHMEKKPYECEICKRTFHLARTLKVHVMCHTGETPHLCHFCTKGFRRKDHLNTHLKRHHKAQSNGVIKVEEIQIDESVKKEYNPELELHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537060;
- 90% Identity
- iTF_01537060;
- 80% Identity
- iTF_01537060;