Xruf026470.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:22583112-22584701[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0089 14 7.4 0.0 24 54 32 62 25 62 0.87 2 10 0.00016 0.25 13.0 0.1 23 44 59 80 55 86 0.91 3 10 3.1 5e+03 -0.7 0.0 27 47 108 128 106 132 0.80 4 10 1.6 2.6e+03 0.2 0.2 22 53 179 207 167 208 0.68 5 10 0.043 69 5.2 0.0 22 44 204 226 197 231 0.91 6 10 0.0003 0.49 12.1 0.3 21 48 231 258 227 262 0.91 7 10 1.7 2.7e+03 0.1 0.0 22 45 322 345 317 351 0.85 8 10 0.0016 2.6 9.8 0.2 22 44 350 372 342 377 0.87 9 10 4.1 6.5e+03 -1.1 0.0 22 47 408 433 403 438 0.85 10 10 0.0086 14 7.5 0.2 26 50 438 461 433 463 0.86
Sequence Information
- Coding Sequence
- ATGGAAACGTTCCGCCAAAGTGAAACTTGCCAAGAAGGGTCCACTGAGCGACACGTGTCAAACAGACACATTGAGACTCTTACCGGAGAAAAGCGTTTCAAGTGCAAACTGTGTGACAAAGATTTTAGATCAAGTGCCAATCTTACGAGACACGTGATGATCCACACGGGCTCGAAACCTCATGTTTGTCAGATTTGCAAGAAAGCATTCACGCAATCGGTAAATTTGAAGAGACATCTATGGACGCACGCTAAGGACAAACAATCACCATACAAATGTGATGATGGACAATGGACTCACATTAAAGACGGGTTTTACGAATGCACAGAGTGCGGAAAAGCCTTTAAATCGCATCACAACCTAAAAAAACACATTAGCCTCCACACAGACAAAAAACTAAATGTTTATGAGAAATCATTTGCGCAAATGGGAAATTTAAATGGAGCAAAGTACACTTGTGAATTTTGTCCAAAAGTGTTTTTTGAGCGATGCAGATTAAAGAAACACTCTAGGATACATACAGGAGACCGCACTTGCCAGTGCGCAGCTTGCGGTAAATGCTTTACAACAAGAACCGATCTTACCAGACACATGGGAATACACACTGGCCAGAAACCGCACGTTTGCAAGATTTGTGGGAGAGCGTTCTTGCAGTTAGGAAATTTAAATAGACATATGGTGACCCATACAAAGGAGGCACCatacaaatgcgaaatttgtaATAGGACGTTCACCCAGTCGTGTAATTTAAAGAAACACTTTAGAAAGAAGCACACAAATGGAGGTATCGTTATCGCAAGCACTGGGGTACAAGAGCCTAACAAAGAAAGAATTACTGTGAAATTAAAAAAGGAAGTAACAGATGAAGAAAATGCAGTTGCGAAgattggaaattttgaaaaagttttTGTAAATGAAGAGTTCGAAATGGAAAATAGTAATAGTGTTGGAAGTAATGTCGAAGAAAAGCGTTCCAAGTGCACGGTGTGTAGCAAAGGTTTCAAATCGGGGGCCGACCTCAGGAAACACACTAGGATCCATACCGGTGAAAAGCTTTGCATTTGCACGATTTGCGAGAAAGCATTCTCGCAAGCAGAAAATTTAAAAAGGCACCTGTTGACGCATGTAGATGACAAACAAATGCTGCACAAATGCGAAACTTGTCAAAAGGCGTTCCCCGAGCGATGGAAATTAAACAGACACACTAGGATTCATACGGGAGAAAAGTGTTTCAAATGTATGGtttgtgacaaaaattttagatTACAGAACTACCTTACGAAGCACATGCAGCTCCACAATAAGCAGTATGTTTGCGAGTTTTGCAACAACGCTTTCACGCGTTCAAGAGATTTAAGGAAGCATTTATTGAAGCACTCCGCAAGTAGTATTTGCATGAAATCAGAAGAAAACACTACAGATGAAGAAAATGTTTCTGTAAATAAAGAGTACGAGAGGAAAAATGGAAATAGTGTTAGCATAAAATTAGAGTATATAACAGACGAAGAAGAAAATGGTGCTATACGATCTCGAAATTTTGAAGAGCTTGTCAAAATTGAAGAGTTCGAGGTGAAAGATgaaaataattaa
- Protein Sequence
- METFRQSETCQEGSTERHVSNRHIETLTGEKRFKCKLCDKDFRSSANLTRHVMIHTGSKPHVCQICKKAFTQSVNLKRHLWTHAKDKQSPYKCDDGQWTHIKDGFYECTECGKAFKSHHNLKKHISLHTDKKLNVYEKSFAQMGNLNGAKYTCEFCPKVFFERCRLKKHSRIHTGDRTCQCAACGKCFTTRTDLTRHMGIHTGQKPHVCKICGRAFLQLGNLNRHMVTHTKEAPYKCEICNRTFTQSCNLKKHFRKKHTNGGIVIASTGVQEPNKERITVKLKKEVTDEENAVAKIGNFEKVFVNEEFEMENSNSVGSNVEEKRSKCTVCSKGFKSGADLRKHTRIHTGEKLCICTICEKAFSQAENLKRHLLTHVDDKQMLHKCETCQKAFPERWKLNRHTRIHTGEKCFKCMVCDKNFRLQNYLTKHMQLHNKQYVCEFCNNAFTRSRDLRKHLLKHSASSICMKSEENTTDEENVSVNKEYERKNGNSVSIKLEYITDEEENGAIRSRNFEELVKIEEFEVKDENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536880;
- 90% Identity
- iTF_01536880;
- 80% Identity
- iTF_01536880;