Xruf043567.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26748123-26749335[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4 2.2e+03 0.4 0.0 23 47 75 99 65 105 0.59 2 10 0.78 1.3e+03 1.2 0.1 20 31 100 111 91 127 0.79 3 10 0.027 44 5.9 0.0 21 44 129 152 123 157 0.87 4 10 0.0024 3.9 9.2 0.5 21 44 157 180 153 185 0.89 5 10 0.053 86 4.9 0.0 24 44 188 208 185 213 0.90 6 10 0.05 81 5.0 0.2 21 43 213 235 209 239 0.91 7 10 0.0044 7.1 8.4 0.2 22 44 242 264 237 268 0.89 8 10 0.049 80 5.0 0.1 21 48 269 295 265 297 0.87 9 10 0.018 28 6.5 0.2 18 43 294 319 289 324 0.90 10 10 0.00077 1.2 10.8 0.2 21 44 325 348 321 354 0.91
Sequence Information
- Coding Sequence
- ATGTCTCTTGGCGATTTAGTTAAAACGGAATTAAATAACTTAAATAACGACTGGAGGGTCATAGAGATGGAAGAAAAATTTGTTGTAGACGACGCAAAGTCAATAAAACAGTCAGATTTGGGGACAGCAACTAATAAGGTTCAAATTTATTTACAGGCAGATATTTTATATAATGTGGATAACAAAATAATGAATGAACCGAAGAAAAAGATAAAAAATTCGAATAGCTTCAAATGTCCCGATTGTCCAAAAGTCTACGCCTCTGTAGGTGGATTAAAATACCATTTGTCCGTACATACAGGTGAAAAGCCAAACAGCTGCGGAATATGCGGCAAAGCATTCAGCCTGCCGCAAATTTTAAAACTCCACATGTCGTGTCACACGGCTGAGAAGACGTAtaagtgtgaaatttgtgaaaaacTGTTCCGTTTCAAACAAAATCTGAAGAATCACATGGCGTGTCACAAGCCCGAGAGGCCCCACAAATGCGAAATATGTGGAAAACAGTTCCGCCACTCCCGGTATCTGAAGTCCCATATGTTGTGCCACATGGGCGGTATgccctacaaatgtgaaatatgtgaaAAGGAGTTTCGTCAGTCTTCACATCTGTCTAATCACATGGTGTGTCACACGGAAGAGAAGCCTCACAAATGCGATGTCTGTAAGAAAGAGTTCCGTCACGCCCAAACTCTGAGAAACCACGAGTTGTGCCAGACGGACGACAAGCCCTGCACGTGCGAAATTTGTAAGAAAGGGTTTCGTTCCCCCAGAACTCTAAAGCTTCACATACTGTGTCACACGAACGAAAAACCCTACAAATGCGACATTTGTAAAAAAGAGTTCCGGCAGCTGGAGAGTGTAAAGAGCCACATGATTCGTCACACGAATGAGAAGCCCTACAAGTGCAAAATTTGCGAAAAAGATTTCCGTTACCCCCAAACTCTAAAGCGTCACACGATGTGTCACACGGATGAGAAAccgcacaaatgtgaaatttgcacGAAGGGCTTCCGCACATCGCAACATCTAAAACGTCATGTGATGTGCCACGAACGAAGGGGACCGCCAATGCCGAATTTGGAAGAAGCGGTTCAGTTCCTCACAAAATCTAAAGAGTCACACAGCTGA
- Protein Sequence
- MSLGDLVKTELNNLNNDWRVIEMEEKFVVDDAKSIKQSDLGTATNKVQIYLQADILYNVDNKIMNEPKKKIKNSNSFKCPDCPKVYASVGGLKYHLSVHTGEKPNSCGICGKAFSLPQILKLHMSCHTAEKTYKCEICEKLFRFKQNLKNHMACHKPERPHKCEICGKQFRHSRYLKSHMLCHMGGMPYKCEICEKEFRQSSHLSNHMVCHTEEKPHKCDVCKKEFRHAQTLRNHELCQTDDKPCTCEICKKGFRSPRTLKLHILCHTNEKPYKCDICKKEFRQLESVKSHMIRHTNEKPYKCKICEKDFRYPQTLKRHTMCHTDEKPHKCEICTKGFRTSQHLKRHVMCHERRGPPMPNLEEAVQFLTKSKESHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537010;
- 90% Identity
- iTF_01537010;
- 80% Identity
- iTF_01537010;