Xruf043560.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26730923-26732163[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.6 9e+03 -1.5 0.0 26 48 96 118 86 123 0.74 2 10 0.31 5e+02 2.5 0.1 20 52 118 150 107 151 0.87 3 10 0.0029 4.6 9.0 0.3 13 44 139 170 126 174 0.82 4 10 8.4e-05 0.14 13.9 0.1 21 45 175 199 172 206 0.87 5 10 0.024 39 6.0 0.0 21 45 203 227 201 234 0.87 6 10 0.0063 10 7.9 0.0 21 44 231 254 228 262 0.87 7 10 0.00075 1.2 10.9 0.1 22 45 260 283 256 290 0.87 8 10 0.49 7.8e+02 1.9 0.1 21 44 287 310 283 313 0.86 9 10 2.8 4.5e+03 -0.6 0.0 27 44 321 338 317 342 0.88 10 10 0.0041 6.6 8.5 0.1 21 44 343 366 340 368 0.92
Sequence Information
- Coding Sequence
- AtggaagaaaattttatgtttatAGAGGGAGAATCAATAAAACTAGATTCTTGTGCAGATAGAAAGATGATGTTCTTTTGCGATCCAgttaaaattgaattaaaaaatgaGTGGAGCAACGTAGAGATGGAAGAAAAATACGTTGTAGGAGAAGCGATAAAAGAGTCCGTTGTCGAGTCAAATTTTTGTATTGAGGACAGAAAGgTAGCGATTCTTAATATTACAAATAGTGAAATAAAAAACGAAGCAAGAGAAACAGAAAAAGGAAAAAATCCTAACAAATTCAAATGTCCCGAGTGTCCGAAAGCGTACGTCAGCAGCGGCGGGTTAAAATTCCATCTGTCGGTACATACGGGTGAAAAGCCACACAAGTGCGATAAATGCAAAAAGTCGTTCCGTCTGCCGCAATATCTAGAACGCCACAAGGCATTTCACACGATCGAGAAGCCGCACAGGTGCGAAATTTGTGACATAGCGTTCCATCAGTTCCAAAATCTTAAAACTCACATGATGTGTCACACGGGCGAGAGGCCCCACGTGTGCGACGTTTGCAAAAAAGGGTTCCGTCAGTCCCAGAATCTGAAGACTCACATGATGTGCCACACGGGCGAAAAACCGTACGAATGCGATATGTGCGAAAAGTCATACCGTCAGTCTGCGCATCTGATGGAGCACATGATGTGTCACACGGACGAGAAGCCCCACAAGTGCGGAATTTGTAAAAAAGGGTTTCGCCACTCCCAGAAACTGAAGGGCCACATGCTGTGCCACGTAGGCGacaagccccacaaatgtgaaatttgtaaaaaagcTTTCACCCAGTCCCAAAATCTCAAGAGTCACATGATGTGTCACACGGGCGAGAAACCCTACAAATGCGACGTTTGTAAAAAAGCGTTCCGACGGACGTCCCATCTGATCAGTCACATGGTGTGCCACAGCGGCGGCAATTCTTACGAATGCGAGTTTTGTAAAAAACTCTTCCGTTACGAACAGAGTCTCATGCGTCACATGCTGTGCCACACCGATGAGAAGCCTTACGAATGCAGCATTTGTAAAAAGCTGTTCCGTCACTCGCAAAGTTTAAAGTCTCATGTGTGTCAAGGACAAGCTccaataatttga
- Protein Sequence
- MEENFMFIEGESIKLDSCADRKMMFFCDPVKIELKNEWSNVEMEEKYVVGEAIKESVVESNFCIEDRKVAILNITNSEIKNEARETEKGKNPNKFKCPECPKAYVSSGGLKFHLSVHTGEKPHKCDKCKKSFRLPQYLERHKAFHTIEKPHRCEICDIAFHQFQNLKTHMMCHTGERPHVCDVCKKGFRQSQNLKTHMMCHTGEKPYECDMCEKSYRQSAHLMEHMMCHTDEKPHKCGICKKGFRHSQKLKGHMLCHVGDKPHKCEICKKAFTQSQNLKSHMMCHTGEKPYKCDVCKKAFRRTSHLISHMVCHSGGNSYECEFCKKLFRYEQSLMRHMLCHTDEKPYECSICKKLFRHSQSLKSHVCQGQAPII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537048;
- 90% Identity
- iTF_01537048;
- 80% Identity
- iTF_01537048;