Xruf043558.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26716702-26718263[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0048 7.8 8.3 0.3 21 48 141 168 135 172 0.82 2 12 0.0012 1.9 10.2 0.4 23 43 171 191 167 196 0.90 3 12 0.0022 3.5 9.4 0.1 21 49 197 225 194 228 0.85 4 12 9.7e-05 0.16 13.7 0.1 21 45 225 249 221 253 0.91 5 12 0.047 76 5.1 0.1 22 44 254 276 249 284 0.87 6 12 3.2 5.1e+03 -0.8 0.0 21 44 281 304 277 312 0.81 7 12 0.2 3.2e+02 3.1 0.2 22 44 310 332 292 339 0.84 8 12 0.0077 12 7.6 0.0 26 51 342 367 337 370 0.83 9 12 0.0026 4.1 9.1 0.1 22 45 366 389 361 397 0.83 10 12 1.6 2.6e+03 0.2 0.0 23 52 395 424 392 425 0.83 11 12 0.0063 10 7.9 0.4 22 44 422 444 413 449 0.92 12 12 0.00068 1.1 11.0 1.0 22 48 450 476 446 480 0.92
Sequence Information
- Coding Sequence
- atgTCCGTAATCGAGTTGAATATTAAAACCGAAATAAAAACAGATTGGAGCGACACAGAAACGGAAGAAAAATGTCCTGCTGACGGAGGAAAGTCAAGTTTTGACCATGTTTTTGTGCAAGATTCGATAACGCCTTATTGCGACCCCGTTAAATCTGAATTAAAGTATGATTGGTGTGACGTAAAGATAGAAGAGAAATTTTTTGTAGAGGACGAAGAGTTGATAAAAGAGTCAGTGGCAGAGTCAGATTTTTGCACAGAAGACAAAAAGGTAGAGATATTTTGTGATACAAGTAATGAAATACAAAATGAACCAGAGGAAACTGAAAAAGGAAAAAACCAAATTAAATTCAGATGTCCCGAATGTCCAAAAGTCTGCGCCACCGTCAGTGGGTTAAAATTCCATGCGACGGTGCATACCAGCGAAGCACAATACAAGTGCGAGatatgtgataaagcatttcgtcagccgcaaattttgaaacgtCACATGCTGTGCCACTCGGTCAAGAAGCCCTATGCCTGCGAAATATGTCGAAAAGAATTCCGTCACTCGAGAAATCTAAAGGCTCATGCGATGTGTCACACGGgtgagaagccccacaaatgtcaCATATGTGAAAAAGCGTTCCGGCAGTCTGCGCACTTAACTGGTCACATGGTGTGTCACTCAGTTGAGAAGCCCCATAAATGCGACATTTGTAACAAAAGTTTCCGTTCCTCTCAAAACCTAAGGGGCCACATGAAGTGCCACACGGATGAGAAGTCGCATAAATGCGAATTTTGTGACAGAATGTTTCGTCGCTTCCGAAATCTGAAGACCCATATGATGTACCACAAAGGCGAATTGCCTTACAAATGTGACGTATGTGATAAAGCGTTCCGCCACCCTTCTCATCTATCTGGTCACATGATGTGCCACTCGGAGGACAAACCGCATAAATGTGACGTCTGTGGGAGAGAATTCCGTCATTTGCGTTCGCTGAAAAGTCACATGCTGTGCCACATGGACGCGATGTCCTACCAGTGCAAAATTTGCGAAAAGGGCTTCCGCACCTCCAAAAATATAAATCGTCACATGATGAGTCACTCGAATGACAAGCCCTTCGTTTGCGAAATTTGTAAAAAGGAGTTCCGTCAGTCCCAAAGTCTAAAACTTCACGTGATGTGCCACACCGACAAGAAGCCCTTCAAATGTGAAACTTGCAACAAAGGCTTCTGCACCACCAAGAATTTGAAGAGTCACATGGTGTGCCACACGATCGAGAAGCCCCACAAGTGCGAAATTTGCGAAAAAGTATTCTGTCGTGCTCAAAATCTGAAGAGTCACATGATATGCCACATGGACGAGAAGCCCTACAAATGCATAATTTGTAAAAGAGGATTCCATCACACCCAAAATCTAAGGCGTCACATGACTTTTTGTCACACACAGGAGGAGTCCTGTGGAAGCGATATTTGTGAAACGAATTCTGTCGCTTCGAAAATATAG
- Protein Sequence
- MSVIELNIKTEIKTDWSDTETEEKCPADGGKSSFDHVFVQDSITPYCDPVKSELKYDWCDVKIEEKFFVEDEELIKESVAESDFCTEDKKVEIFCDTSNEIQNEPEETEKGKNQIKFRCPECPKVCATVSGLKFHATVHTSEAQYKCEICDKAFRQPQILKRHMLCHSVKKPYACEICRKEFRHSRNLKAHAMCHTGEKPHKCHICEKAFRQSAHLTGHMVCHSVEKPHKCDICNKSFRSSQNLRGHMKCHTDEKSHKCEFCDRMFRRFRNLKTHMMYHKGELPYKCDVCDKAFRHPSHLSGHMMCHSEDKPHKCDVCGREFRHLRSLKSHMLCHMDAMSYQCKICEKGFRTSKNINRHMMSHSNDKPFVCEICKKEFRQSQSLKLHVMCHTDKKPFKCETCNKGFCTTKNLKSHMVCHTIEKPHKCEICEKVFCRAQNLKSHMICHMDEKPYKCIICKRGFHHTQNLRRHMTFCHTQEESCGSDICETNSVASKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536944;
- 90% Identity
- iTF_01536944;
- 80% Identity
- iTF_01536944;