Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014502.1:26257824-26258922[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-05 0.0014 20.5 0.1 1 23 72 94 72 94 0.96

2 9 0.00058 0.047 15.7 2.9 1 23 100 122 100 122 0.98

3 9 6.4e-07 5.2e-05 25.0 3.0 1 23 128 150 128 150 0.98

4 9 0.00095 0.077 15.0 5.1 1 21 156 176 156 178 0.95

5 9 2.5e-06 0.0002 23.2 0.5 1 23 184 206 184 206 0.99

6 9 0.00017 0.014 17.4 3.1 1 23 212 234 212 234 0.97

7 9 0.00081 0.066 15.2 5.8 1 20 240 259 240 262 0.96

8 9 6.6e-06 0.00053 21.8 1.7 1 23 268 290 268 290 0.98

9 9 1.7e-05 0.0014 20.5 4.9 1 21 296 316 296 318 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-05	0.0014	20.5	0.1	1	23	72	94	72	94	0.96
2	9	0.00058	0.047	15.7	2.9	1	23	100	122	100	122	0.98
3	9	6.4e-07	5.2e-05	25.0	3.0	1	23	128	150	128	150	0.98
4	9	0.00095	0.077	15.0	5.1	1	21	156	176	156	178	0.95
5	9	2.5e-06	0.0002	23.2	0.5	1	23	184	206	184	206	0.99
6	9	0.00017	0.014	17.4	3.1	1	23	212	234	212	234	0.97
7	9	0.00081	0.066	15.2	5.8	1	20	240	259	240	262	0.96
8	9	6.6e-06	0.00053	21.8	1.7	1	23	268	290	268	290	0.98
9	9	1.7e-05	0.0014	20.5	4.9	1	21	296	316	296	318	0.95

Sequence Information

Coding Sequence: ATGTCTTCTTGCGATCCAgttaaaattgaattaaaagACGATGTGAGGGACATAGAGATGGAAGAAAAGTTTATTGTAGATGAAGCAGTGAAAGAGGCATTTGTCGAGCCCAATTTTTGTATACAGGACAATAAGGCAGATGGAAATAAGGATGAAATAATTGCTGAAGCAAAAGAGACTGTTAaagcaaaaattgaaaatgaaggGAATAAATTCAAATGTCCCGATTGCTCGAAAGCCTACGCGAATGCCAGTGGATTACGAAGCCATTCCAGTGTTCATACTGGAGCGAGACCCTACGAGTGCAAGATATGCCATAAATCGTTCCGTCTGGCGCAAATTTTAAAGTCTCATTTGCGCTATCACACCGGGGAAATGCcttacaaatgcgaaatttgtaaaaaaggaTTTTGCACCAATTCTAACTTGAAAAGCCACTTGATGGGTCACACGGGAGAGAAGCCGTACAATTGCGCGGTTTGTAAAAAAGGGTTCTGTCGTTCCGAAAGTCTGAAGAGTCACATGATGTGTCACACTAAGGAGAAGCCTTACGAGTGCGAAATTTGTAGAAAAACGTTCGGTCTCCCCCAAAATTTAAAGAATCATATGATGCGTCACACGGgagaaaagccccacaaatgtgaaatttgtaaaaagTCGTTCGGTCTAAATGGGCATATAAAGAGACATATGATGGGTCACACAAACGTAAAGCCtcacaaatgcgaaatttgtaaaaaaacgTTTCGCGAGTTTTCCTATCTAAAGAATCATATGGTGTGCCACTCGGTCGTAAAGCCCTACAAATGCGACATTTGTGAAAAAACATTCGGTCGCTCCCACGTTTTAAAGCGACATATCTTGTTGCACACGAGAGAgaagccttacaaatgtgaaatttgtaaaaaattctTCAGTCAATCTGCGAATCTAAAGAAACATGTGAAATGCCACACAAGACGAGAAACCACTTTAACATCAGTTATGCACGAAAAGTTTTCTACGCGAGTTGATGGTGATGAACAGATCATAGCATAG
Protein Sequence: MSSCDPVKIELKDDVRDIEMEEKFIVDEAVKEAFVEPNFCIQDNKADGNKDEIIAEAKETVKAKIENEGNKFKCPDCSKAYANASGLRSHSSVHTGARPYECKICHKSFRLAQILKSHLRYHTGEMPYKCEICKKGFCTNSNLKSHLMGHTGEKPYNCAVCKKGFCRSESLKSHMMCHTKEKPYECEICRKTFGLPQNLKNHMMRHTGEKPHKCEICKKSFGLNGHIKRHMMGHTNVKPHKCEICKKTFREFSYLKNHMVCHSVVKPYKCDICEKTFGRSHVLKRHILLHTREKPYKCEICKKFFSQSANLKKHVKCHTRRETTLTSVMHEKFSTRVDGDEQIIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01537509;
90% Identity: iTF_01537509;
80% Identity: iTF_01537509;