Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014497.1:23208804-23210393[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0037 0.3 13.2 0.2 5 22 10 27 8 27 0.94

2 16 3.2e-08 2.6e-06 29.1 1.3 2 23 35 56 34 56 0.98

3 16 3.2e-07 2.6e-05 25.9 2.6 1 23 62 84 62 84 0.98

4 16 2.2e-06 0.00017 23.3 6.3 1 23 90 112 90 112 0.98

5 16 2.4e-06 0.0002 23.2 3.2 1 23 118 140 118 140 0.98

6 16 7.8e-07 6.3e-05 24.7 1.0 1 23 146 168 146 168 0.99

7 16 0.19 15 7.8 0.0 5 18 175 188 174 188 0.92

8 16 2.1e-05 0.0017 20.3 2.9 1 23 190 212 190 212 0.97

9 16 0.00027 0.022 16.8 4.7 1 23 218 240 218 240 0.98

10 16 8.8e-06 0.00071 21.4 3.8 1 23 246 268 246 268 0.98

11 16 1.5e-05 0.0012 20.7 6.4 1 23 274 296 274 296 0.98

12 16 0.1 8.4 8.6 1.0 1 23 302 326 302 326 0.91

13 16 0.00017 0.014 17.4 0.5 2 23 357 379 357 379 0.95

14 16 8.3e-06 0.00066 21.5 2.1 1 23 385 407 385 407 0.98

15 16 0.0099 0.8 11.8 0.5 1 12 413 424 413 429 0.88

16 16 0.049 4 9.6 1.2 1 20 435 454 435 456 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0037	0.3	13.2	0.2	5	22	10	27	8	27	0.94
2	16	3.2e-08	2.6e-06	29.1	1.3	2	23	35	56	34	56	0.98
3	16	3.2e-07	2.6e-05	25.9	2.6	1	23	62	84	62	84	0.98
4	16	2.2e-06	0.00017	23.3	6.3	1	23	90	112	90	112	0.98
5	16	2.4e-06	0.0002	23.2	3.2	1	23	118	140	118	140	0.98
6	16	7.8e-07	6.3e-05	24.7	1.0	1	23	146	168	146	168	0.99
7	16	0.19	15	7.8	0.0	5	18	175	188	174	188	0.92
8	16	2.1e-05	0.0017	20.3	2.9	1	23	190	212	190	212	0.97
9	16	0.00027	0.022	16.8	4.7	1	23	218	240	218	240	0.98
10	16	8.8e-06	0.00071	21.4	3.8	1	23	246	268	246	268	0.98
11	16	1.5e-05	0.0012	20.7	6.4	1	23	274	296	274	296	0.98
12	16	0.1	8.4	8.6	1.0	1	23	302	326	302	326	0.91
13	16	0.00017	0.014	17.4	0.5	2	23	357	379	357	379	0.95
14	16	8.3e-06	0.00066	21.5	2.1	1	23	385	407	385	407	0.98
15	16	0.0099	0.8	11.8	0.5	1	12	413	424	413	429	0.88
16	16	0.049	4	9.6	1.2	1	20	435	454	435	456	0.93

Sequence Information

Coding Sequence: ATGGGACGTACCAGTGAAACACCTTTCCATTGCCAAAAGGCATTTTCTGAGCGCAGTACTTTGAAAAGTCATATTAATACTCGCATGGGAGAAAGGCCcaacaaatgtgaaatttgccagaaggCATTCTCTGACCGCTCTAACTTGACACGTCATATTAagactcacacaggagaaaggccccacaaatgtgaaatttgtcagaAAGCATTCTCTGACCGCTCTACCTTGACAAGTCATATTAAGACTCACACGGGAGAAAagtcccacaaatgtgaaatttgccagaaaacatTCTCTCGGCATTCTACTTTAACAAATcatgttaggactcacacaggagaaaagcctcacaaatgtgaaatttgccagaaaacatTCTCTCAGAGTTCTACTTTAATGAACCATGTTACGACTCACACCGTGGAAAGGTCttataaatgtgaaatttgccagaaagcattcaaTGGGACTTCTAATTTAAAGAAACACCTTAAAAttcacacaggagaaaagcgTAAGATTTGTCAGAAAGCATTCTCTGATCGCTCTGCCCTGAGAAGGCCTCATAGCTGTGAGATTTGCCAGAAAGCGTTCGTTGAGCATTCTAATTTAAAGCAACACCTTAAAATTCACACGGGAGAAaaacctcacaaatgtgaaatttgccagagagCATTTTTTGAGACCTCTCATTTGAGGAAACATGTTAtgactcacacaggagaaaagcctcacaagtgtgaaatttgccaaaaagcattcattGAGCATTCTAATTTAAAGAAACACCTTAAAATTCACACGGGAgagaagcctcacaaatgtgaaatttgccagaaagcattctgcAGGCGTTCTGATTTAACAGCACACGTTTGTACTCATACGGGAGAATGGCTTCACAAATGTGAAGTTTGCCAGCAAGTATTCATATTCACCAAGCCATACATGTTAAGCAGACACGTTAAGGCTCATACTGGAGGAAGTAAATTCAAGTGCAACAGTTTTAGATTAAATGACGAACTTACACGTAATATGAGGATACACACAGGTAAAAAGCCCCCCGTTTGCAATATTTGCGAGAAACCGTTCTCACATTTGAGAAATATAAAGGCGCATATTAAAGAGGTGCACGACAAAGAAACCtcacacaaatgtgaaatttgtgaaaagGCATTCTCCAAGCGTGCCACTTTATTAAAGCATGTCAAGACACATACGGGACAAAGctcttacaagtgtgaaatttgtaaTAAGGTGTTCAGCCACGTGTATCTTAACCATGCCAATGAAAGTACATTTTTCTGTAAGTTTTGCAATGCTGATTTTAAGTCTGAATGGTACTTGGAGAAACATAAAGAGAAGCAAGTAAATGGGGAAATCGTCGCAGCAAAAATCGAGGAATCCCAAAATGAGCAGtccaatgaaaatatttatggCGTAAAATTGGACGAGAATATAAcagatgaagaagaaaatgtCGTTGTAAAGTctgaaaagtttataaaaaatgaAGAGTATGAAGTGAAAAATCAGAGCAGTGTTGGTGTAAAAGAAGAAAGTGATACTTTAGACGAAGGGGAATAG
Protein Sequence: MGRTSETPFHCQKAFSERSTLKSHINTRMGERPNKCEICQKAFSDRSNLTRHIKTHTGERPHKCEICQKAFSDRSTLTSHIKTHTGEKSHKCEICQKTFSRHSTLTNHVRTHTGEKPHKCEICQKTFSQSSTLMNHVTTHTVERSYKCEICQKAFNGTSNLKKHLKIHTGEKRKICQKAFSDRSALRRPHSCEICQKAFVEHSNLKQHLKIHTGEKPHKCEICQRAFFETSHLRKHVMTHTGEKPHKCEICQKAFIEHSNLKKHLKIHTGEKPHKCEICQKAFCRRSDLTAHVCTHTGEWLHKCEVCQQVFIFTKPYMLSRHVKAHTGGSKFKCNSFRLNDELTRNMRIHTGKKPPVCNICEKPFSHLRNIKAHIKEVHDKETSHKCEICEKAFSKRATLLKHVKTHTGQSSYKCEICNKVFSHVYLNHANESTFFCKFCNADFKSEWYLEKHKEKQVNGEIVAAKIEESQNEQSNENIYGVKLDENITDEEENVVVKSEKFIKNEEYEVKNQSSVGVKEESDTLDEGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01536782;
90% Identity: iTF_01536782;
80% Identity: iTF_01536782;