Xruf047068.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963966045.2
- Location
- OZ014504.1:956216-963776[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-108 1.3e-103 348.0 29.2 1 300 158 457 158 457 0.93 2 2 0.059 3.2e+03 -1.3 6.8 108 142 485 519 459 563 0.63
Sequence Information
- Coding Sequence
- ATGAGTGCCGAAACGCGTGAGGATCGTCCGCAAAATCTGGATCCAGTCGCCGgaggaaatttatcaaaatGTGAATCAGAAGCTGAGAGCGACGATTCGCTTCTGGACATAGTGAACTTTCTAGACTCTGAAGACGACTTAGAGGATGTTTCTTTGAGTAAAAACAGTGAAATTGCGGATCAAGATGGCGATAAGGACTTAGATTGCTTATCAGATAGAATAATAACCGTGAATAGTGCGCTTTTAAAAGGTAGTGGGGCGGATGGGGGCAACGTGGAAATCGAGGGGGCAACTTTGAGTGAGACTGAAGACTGCGATGAAATTGAAAATAGAGATATTGTTAGTGAGCAGCGTAAAGTTGATGGAGAAATTGTGGATGTTAATAGAAATAATTTGAAGAGGACTGTGAGTGTTAAAAGTGATGTTTCGGATCATATTATAGAACAGTTTTTGGATAAATCGAACGAGCACGCTGAGGCGCTCCTGTTGGTAAAACGGCAGGCGCGGGCAGAGGCCAGGGAGATTCGCATGAGAGAGTTGGAGAGGCAGCAAAAAGAGCAGGAAGAAAATGCCGATCGGCAGTTCGATATGTTGGCGGAGCCCATGGGGAGGTCCTCCAGGACAGGCACGGCCTCCAGCCGGTACCTCTCCAGCAGGAGGAGTTCTGAGGATTCCCTGGAAGACGGAGGCAGCCTCAGAGATTTGAGGCACGAACTCAAGGAAGTAGAAGAAAAATTTCGGAAGGCTATGATAGCAAACGCTCAACTCGATAACGACAAATCGGCACAAACATATCAACTGGAGTTACTCAAGGATAGGTTGGAGGAACTGGAGGAAGAACACTCCCAATTGAAGCGCGAACACCGGGACAAGTGCAGGGAGCACGATCAATTGAAGAGGCTCGCGGCGAGACTTAAAGAGGACTTGGCTGTGACTCGCCACGAGCTGGAAGAAAGGGACCGACTCATAGCGGAGAAGGGCCTGGTCATCGTTGGGGAGGACGTGCCCCCCGACGAAGACCAGTCCTTTGGGGAGTCCAGTAGTTTAAATAATAGTTTAGGCACACCTAGGAAGGCGTTGGTCAGCGCCGAAAACGCCGAGCTCTTGCAGAACGCTGGGGAGGGCAGCTTAGATGTACGGTTAGGCAGGTTTTCGAGAGAGAAGAGCGACCTCCTAGATCAAATAAGCCATTTACGCTTAGAATTAGAAGAAGAAAGAAGCAAGAGGCGGAAGTCGAACGCCGGGTTGCCGACGCAGAACGGTCCCACGTCAGATTCCGACGTCGACGTCGCCGATATACACAGAGAGGCGACTAAGCAGCTGGCGGAGTACAAGTTCAGGGCGCAGAAGGCCGAGCAGGACGTGGTGACGTTGCAGACGACGGTCGCGAGGCTGGAAAGCCAGGTGATCCGTTACAAGTCGGCCATGGAGATTTCGGAAAAGTCGGAGGAAGCTCTGAAGCTGGAGAAGCGGAAGCTGCAGCGGGAGGTGGATAATCTGCGGGATAAGGTGATGCTCGTGGAGGCCACGAAAGAGGCCCTAACGAAGCAGTGCAAGCGTCTGTTGGGTCAAAAAATCGGCTGGAGGGAAGCTCAGAGTCGGGCTGAAGAGTTGGAGACGTCCAACACTCATCTGCTCAAGAGATTAGATAAACTGAAGAATGCCAAGTCTGCTTTACTTAAAGAACTCTGA
- Protein Sequence
- MSAETREDRPQNLDPVAGGNLSKCESEAESDDSLLDIVNFLDSEDDLEDVSLSKNSEIADQDGDKDLDCLSDRIITVNSALLKGSGADGGNVEIEGATLSETEDCDEIENRDIVSEQRKVDGEIVDVNRNNLKRTVSVKSDVSDHIIEQFLDKSNEHAEALLLVKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMGRSSRTGTASSRYLSSRRSSEDSLEDGGSLRDLRHELKEVEEKFRKAMIANAQLDNDKSAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLAARLKEDLAVTRHELEERDRLIAEKGLVIVGEDVPPDEDQSFGESSSLNNSLGTPRKALVSAENAELLQNAGEGSLDVRLGRFSREKSDLLDQISHLRLELEEERSKRRKSNAGLPTQNGPTSDSDVDVADIHREATKQLAEYKFRAQKAEQDVVTLQTTVARLESQVIRYKSAMEISEKSEEALKLEKRKLQREVDNLRDKVMLVEATKEALTKQCKRLLGQKIGWREAQSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -