Xruf029407.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014498.1:7509134-7511343[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-06 0.00031 21.9 0.0 3 39 37 72 35 77 0.90
Sequence Information
- Coding Sequence
- ATGATAATAATTCAGTACCCATTAGGCAACCTTCAGCAGAAAAGGCTAGGCTACATAGTCCAGTTTCTCCAAGTGAAGAAAGTAATGCCTTACAATCGTTTAAGCGTGGATAATTTGAATACAGCTTTGCGtcttattcaaaatggcgcttcACAAAGAGAAATTGCTAGATTTTTTAATGTTTCGCATAGCGTACTAAGCAGAGCTCATCAACGACTTCAAACTACTGGAAGTGTTGCTTTTCGGCATGGCGGAGGTCGCCAAAGAAGTCTTACACCAGCGCAGACACATTATGTGCGCTTAATCGCTAGGAGAAATCCCACTCATACGTCAACTCAAATTAATAATGAGCTTCATGATGCTGCTGGAATTGATGTTTCCACTCGAACCATCAGAAGAAGGTTGAATGAGTACAATTTAAGAGCTAGAAGGCGTGCGACATGTTGTTTGCTCACTAGGCATCATCGTGTTGCCCGTAGAATTTGGGCCGAAGAACATATAAACTGGGGCAATGAAGAATGGAGCCGATGCTTATTCACTGatgaatcaaaatttaatcTACACCATTCAGATGGAAGAGTATTAGTGTGGAGAAGACCAGGTGAGCGTTATCTAGACCGTAATATGGCCCCCCATGTAGCTTTTGGTGGTGGGGGTGTCACAGTCTGGGGAGGCATAATTATGAACGGCCGCACTGATCTGATTGTTTTGATTAATGAAACCATGAATGCTCACGTCTATAGAGACAGATGTATTCTACCAATTATTGTTCcatttgctgaaaattttggaCGAGATTTTTTATTGGTCGACGATAATGCTCGCCCCCACcgtgcaagaattattaccaaCTCCCTACAAGAGCACGAAATCGGTAGACTGAATTGGCCTGCAAGAAGTCCAGACATGAATCCAATAGAGCATGTCTGGGACAAGTTGCAGAAGCAATTAAACCAACGCCAGCGTTATCCTTCTACACTACAAGAGCTCTCTGTTGCTTTATTGGAAGAATGGGAATTGATCCCACAGGAATTTATCAATGAAGTGATTAGAAGTATGCCTCGAAGATGCAGAGCACTTCTGGAAGCTCGCGGAGGGCCTACAAAATACTGA
- Protein Sequence
- MIIIQYPLGNLQQKRLGYIVQFLQVKKVMPYNRLSVDNLNTALRLIQNGASQREIARFFNVSHSVLSRAHQRLQTTGSVAFRHGGGRQRSLTPAQTHYVRLIARRNPTHTSTQINNELHDAAGIDVSTRTIRRRLNEYNLRARRRATCCLLTRHHRVARRIWAEEHINWGNEEWSRCLFTDESKFNLHHSDGRVLVWRRPGERYLDRNMAPHVAFGGGGVTVWGGIIMNGRTDLIVLINETMNAHVYRDRCILPIIVPFAENFGRDFLLVDDNARPHRARIITNSLQEHEIGRLNWPARSPDMNPIEHVWDKLQKQLNQRQRYPSTLQELSVALLEEWELIPQEFINEVIRSMPRRCRALLEARGGPTKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536161; iTF_01536043; iTF_01536013; iTF_01536014; iTF_01536015; iTF_01536016; iTF_01536017; iTF_01536018; iTF_01536156; iTF_01536029; iTF_01536030; iTF_01536031; iTF_01536160;
- 90% Identity
- iTF_01536161; iTF_01536043; iTF_01536013; iTF_01536014; iTF_01536015; iTF_01536016; iTF_01536017; iTF_01536018; iTF_01536156; iTF_01536029; iTF_01536030; iTF_01536031; iTF_01536160;
- 80% Identity
- iTF_01536156;