Xruf017591.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- tc1a
- Assembly
- GCA_963966045.2
- Location
- OZ014495.1:29898495-29899523[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-06 0.00028 22.1 0.0 3 39 9 44 7 49 0.90 2 2 8.8 1.3e+03 0.8 0.0 27 40 97 110 93 114 0.88
Sequence Information
- Coding Sequence
- atgcCTTACAATCGTTTAAGCGTAGATAATTTGAATACAGCTTTGCGTCTTATCCAAAATGGCGCTTCACAAAGAGAAATTGCTAGATTTTTTAATGTTTCGCATAGCGTACTAAGCAGAGCTCATCAACGACTTCAAACTACTGGAAGTGTTGCTTTCCGGCATGGCGGAGGTCGTCAAAGAAGTCTTACACCAGCGCAGGCACATTATGTGCGCTTAACCGCTAGGCGAAATCCCACTCATACGTCAACTCAAATTAATAATGAGCTTCACGATGCTGCTGGAATTGATGTTTCCACTCGAACCATCAGAAGAAGGTTGAATGAGTCCAATTTAAGAGCTAGAAGGCATGCGACATGTTGCTTGCTTACTAGGCAGCATCGCGTTGCCCGAAGAATTTGGGCTGAAGAACATATAAACTGGGGCAATGAAGAATGGAGCCGATGCTTATTCACCGATGAATCAAAATTTCATCTACACCCTTCAGATCGAAGAGTGTTCGTGTGGAGAAGACCAGGTGAGCGTTATCTAGACCGTAATATGTCGCCCCGTGTAGCTTTTGGTGGTGGGGGTGTCACAGCCTGGGGAGGCATAATTATGAACAGCCGCACTGACCTGATTGTTTTGATTAATGAAACCAAGAATGCTCACATCTATAGGGACAGATGTATTCTACCAATTATTGTTCcatttgctgaaaattttggaCGAGATTTTTTATTGGTCGACGATAATGCTCGCCCCCACcgtgcaagaattattaccaaCTCCCTACAAGAACACGAAATCGTTAGAATGAATTGGCCTGAAAGAAGTCCAGACATAAATCCAATAGAGCATGTCTGGGACAAGTTGCAGAAGCAATTAAACCAACGCCAGCGTTATCCTTCTACACTACAAGAGCTGTCTGTCGCTATATTGGAAGAATGGGAATTGATACCACAGGAATTTATCAATGAAGTGATTAGGAGTATGCCTCGAAGATGCAGAGTACTTCTGGAAGCTCGCGGAGGGCCTACGAAATACTAA
- Protein Sequence
- MPYNRLSVDNLNTALRLIQNGASQREIARFFNVSHSVLSRAHQRLQTTGSVAFRHGGGRQRSLTPAQAHYVRLTARRNPTHTSTQINNELHDAAGIDVSTRTIRRRLNESNLRARRHATCCLLTRQHRVARRIWAEEHINWGNEEWSRCLFTDESKFHLHPSDRRVFVWRRPGERYLDRNMSPRVAFGGGGVTAWGGIIMNSRTDLIVLINETKNAHIYRDRCILPIIVPFAENFGRDFLLVDDNARPHRARIITNSLQEHEIVRMNWPERSPDINPIEHVWDKLQKQLNQRQRYPSTLQELSVAILEEWELIPQEFINEVIRSMPRRCRVLLEARGGPTKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536033;
- 90% Identity
- iTF_01536033;
- 80% Identity
- -