Xruf021689.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- foxo
- Assembly
- GCA_963966045.2
- Location
- OZ014496.1:30060121-30060516[-]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-15 8.9e-12 46.5 0.0 4 48 71 119 69 123 0.85
Sequence Information
- Coding Sequence
- ATGAACCTGAACATCATGGAACCGCTCGCGGAGCTCGACGGTTTCGAACCGCAAACCCGCGCGCGATCCAACACGTGGCCTCTGCCGCGGCCGGAGAATTACGTCGAGCCCGGCGAGGAAGCCGGCAACAAGTGCGCGGGGCTGCCCGTCCCAGCGCCGACGACCGCCGCCCCAACCAAAAAGAATTCGAGCCGTCGCAACGCTTGGGGCAACCTGAGCTACGCGGATCTTATAACTCAAGCCATCACTTCGTCCGCCGACAAAAGGCTCACGCTTTCCCAGATTTACGAATGGATGGTGCAGAACGTCCCCTATTTTAAGGATAAGGGCGACAGCAACAGCTCTGCTGGTTGGAAGGTAAGACACTTTAATTTTCCGATTGATAGAGCGGTCTAG
- Protein Sequence
- MNLNIMEPLAELDGFEPQTRARSNTWPLPRPENYVEPGEEAGNKCAGLPVPAPTTAAPTKKNSSRRNAWGNLSYADLITQAITSSADKRLTLSQIYEWMVQNVPYFKDKGDSNSSAGWKVRHFNFPIDRAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414877;
- 90% Identity
- iTF_00244033; iTF_00398657; iTF_00788341; iTF_01126177; iTF_00902056; iTF_01368840; iTF_00885718; iTF_01409772; iTF_00429709; iTF_01196528; iTF_01295795; iTF_00328974; iTF_00755268; iTF_00327679; iTF_00369396; iTF_01283128; iTF_00414877; iTF_00870379; iTF_01480676;
- 80% Identity
- -