Basic Information

Insect: Xestia xanthographa
Gene Symbol: Bcl11a
Assembly: GCA_905147715.1
Location: LR990661.1:5472138-5499572[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.085 17 8.1 8.6 1 23 252 274 252 274 0.96

2 12 6.4e-06 0.0013 21.1 2.0 2 23 282 303 281 303 0.96

3 12 0.093 18 8.0 0.3 1 23 307 329 307 329 0.97

4 12 0.00059 0.12 14.9 3.0 1 23 334 357 334 357 0.97

5 12 0.0018 0.37 13.3 0.2 3 23 363 384 362 384 0.96

6 12 0.015 2.9 10.5 0.1 2 20 500 518 500 520 0.93

7 12 0.0011 0.23 14.0 0.1 3 23 534 555 534 555 0.95

8 12 0.00076 0.15 14.5 1.3 2 23 578 600 578 600 0.96

9 12 0.037 7.3 9.2 2.1 2 23 612 633 611 633 0.96

10 12 0.00037 0.074 15.5 3.9 1 23 639 661 639 661 0.99

11 12 3e-06 0.00059 22.1 0.3 1 23 667 689 667 689 0.98

12 12 0.00097 0.19 14.2 0.9 1 23 695 718 695 718 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.085	17	8.1	8.6	1	23	252	274	252	274	0.96
2	12	6.4e-06	0.0013	21.1	2.0	2	23	282	303	281	303	0.96
3	12	0.093	18	8.0	0.3	1	23	307	329	307	329	0.97
4	12	0.00059	0.12	14.9	3.0	1	23	334	357	334	357	0.97
5	12	0.0018	0.37	13.3	0.2	3	23	363	384	362	384	0.96
6	12	0.015	2.9	10.5	0.1	2	20	500	518	500	520	0.93
7	12	0.0011	0.23	14.0	0.1	3	23	534	555	534	555	0.95
8	12	0.00076	0.15	14.5	1.3	2	23	578	600	578	600	0.96
9	12	0.037	7.3	9.2	2.1	2	23	612	633	611	633	0.96
10	12	0.00037	0.074	15.5	3.9	1	23	639	661	639	661	0.99
11	12	3e-06	0.00059	22.1	0.3	1	23	667	689	667	689	0.98
12	12	0.00097	0.19	14.2	0.9	1	23	695	718	695	718	0.98

Sequence Information

Coding Sequence: ATGGATGTAAAAATGCAGGACATATTTGCATATCCTTTAGAAACTTATTTTGCATCATTGATGATAGAAAGTAAGCCTCTATTCACCAACTTGCCGCCATATGCCTGTTATGAATGCACAGCTCTTGTGAagaagttttatttattcagaGAAAAGTGTCTGCAGAGTCAGGGTCTGCTGTGTGGAATAATTGATGGATGTGGGAAGTTAACACATACAGCAATAAAATCAATACCCAGAAAAAATCTCCTCACAGTTACAAATGTCACCAATATAAGCATAAAAGAAGATACCATATCTGACTGCACCAGCCTAGAAAGACCTCAGTTTGTGGTAGAAGTCATCAAAAAAGAGGATCATGATGATATTGATATTCCTGATCATGTCAGTCCAGATAATAGTTccagtgatgatgatgaatgtgagAAGAATGATCAGAAGAGAATACATGAAGTGGAGAAGGTGGAGATTGCTTTGAAGATAGACACTGGAAAAGAGTCTGATGATCTTGAACTTCCCGAAACAACAGTTGATGTACCAAAATTATCAATCAAAAGATCACGGTCAGTCCAGTCCAAGAAGGCAATAAGGCCAAAGAGGACCCGCACTATGGTTGCTAAGAAGGTGATGAAAGACGACACACAAGGCGACGACCAGACTGATGACTTGATTAATGTTATTACTTTATCGCTTGAAGACCAGTTAGAGGAGATGAACAAACGCAAGCAATCATCAAACTACCTTGAGTGTCCGTACAAGTGCCACCAGTGCTACAGGGGCTTCAACAACACGCACGCCTGGAAACATCACCTCACCAAACACTCTCCGAACCTCGGCGACATAGAGTGCAAAATCTGCAAGTACAGGTTTAAAACGAAACGAAACCTTCAGAGACATGTCCTAAACCACGGGAAGAGATATGTCTGCAATTTATGTCCGTACAACTCTAGTAATATAACTACTGTGAAGCAGCATCAAGGGTCACATAAGGGAGTCACGCACAAGTGTAAATTCTGTGATGAAGTTTTCAATGTAAGAACAACATACGTCAGTCACATGCGAATAAAACATCCATCGGAGAATATTTGTGGTTTCTGTGGGTACTCGTTCTACAGCAAGCAAGGACTCGTCGTACATAAGAATATGATGCACAAGGAACTTGAATTCTTCCAAGATCGTAACATTGGTCCGAAATGCCGTCCAAGGGATCCGCAGCAGTCGCCGTCAGCACCACATTTCGAGTGCATCGGTTTTGCGTTGGTCTTTGAGGCGAACCGTCCATGTTTCTGCGCCGTACAGAAATATTGGAAAAACCAAACTTCTCATCAGGCGGGCTTTTGTGACTTTGGTGATATTATGACTGGCCCAGACTCTTTTGAGCTTATCAACGGCAAATCTTGTGATGGCGCATCTCCTTCGAATCTCATCCTCACACCCCCCAGTGTTCGTGATTGTGGAACCAAGgCAAAACAAGAAGAGAACACAGAAGATGGTCCATACTGCGAGGATTGTGACGTTAAGTTCATATCGACGGAGGCGTACAAGAGACATTTGGTAATGTCAGTCAAGCACACCAGGAGTACAGTCTCTATGAACGGGTGTCGTGTTTGCGGCGAGATCTTcacagaccctgaggagttACGTCTGCATAATCGTGAGGAGCATCCGAAGAAACAACCGAAGCATTACAATTATAATCGGAAGAGTCAAGTTCGGACGAAATGGCCGGCCAAGTGTCAACATTGTCCAGAAGAGTTCGCAACTCCTCGTTCGTACTGGAACCATTACCGACTGAAGCACCCTGACAAGTACGAGCCGGTGCGGAAGAATTGCGTCTGTGATATATGTGGCAAGAGATATGCGTGCAACGCCGTTCTAGAGCTACACAAACGCACGCACTTCGGGGAGCGCCCCTACAAGTGCGCACAGTGCGACAAGGCGTGTTTCTCCGCCCACGACCTGCGCGTGCACCAACAGAAGCACTCCGACACCAGGCCCTTCCCTTGCAGCGTGTGCTCGCAGGCTTTCAAGCGGAAAGAAGCGCTGGAACGCCATTTGAAAATCCATTCTGGCGACAATCCATATAAGTGTGAGATATGCGGCGTAGCATTCGCCAAGTCTTGCACGAGAACACTCCACGTTCGCACCGTCCATACTAAGGAACCTCCGCCGCCGCGCAAACGACGGAACAAGGTGACCAAATAA
Protein Sequence: MDVKMQDIFAYPLETYFASLMIESKPLFTNLPPYACYECTALVKKFYLFREKCLQSQGLLCGIIDGCGKLTHTAIKSIPRKNLLTVTNVTNISIKEDTISDCTSLERPQFVVEVIKKEDHDDIDIPDHVSPDNSSSDDDECEKNDQKRIHEVEKVEIALKIDTGKESDDLELPETTVDVPKLSIKRSRSVQSKKAIRPKRTRTMVAKKVMKDDTQGDDQTDDLINVITLSLEDQLEEMNKRKQSSNYLECPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHVLNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKELEFFQDRNIGPKCRPRDPQQSPSAPHFECIGFALVFEANRPCFCAVQKYWKNQTSHQAGFCDFGDIMTGPDSFELINGKSCDGASPSNLILTPPSVRDCGTKAKQEENTEDGPYCEDCDVKFISTEAYKRHLVMSVKHTRSTVSMNGCRVCGEIFTDPEELRLHNREEHPKKQPKHYNYNRKSQVRTKWPAKCQHCPEEFATPRSYWNHYRLKHPDKYEPVRKNCVCDICGKRYACNAVLELHKRTHFGERPYKCAQCDKACFSAHDLRVHQQKHSDTRPFPCSVCSQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKVTK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906431;
90% Identity: -
80% Identity: -