Xxan047675.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia xanthographa
Gene Symbol
-
Assembly
GCA_905147715.1
Location
LR990660.1:24433080-24440764[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-08 1.6e-05 26.5 0.0 1 44 16 59 16 60 0.93

Sequence Information

Coding Sequence
ATGGTCCGAAATTATGTTAGAAAGACAGACAGGGGAAAGGCATATACTAAAGAAAAATTATTAGAAGCCGTAGAAAAGGTGAAAAACGGAGAATTGACTGCTTATAGAGCCTCCATTAATTACCGGATTCCTCGACCGACAATAGTGGCGCGAGTGTATGGCAGATATGGACTGAAGTCAGATTCTTTAGGAAGAAGTACAACTATTCGTAAAGATGTAGAACAAAACTTGGCTCAAAACTTGCACCAAATGGAGAGATACGGATTTGGACTGTCAAGAAAAGAAATTATAGAACTTGTCGGACACTACGTAaccaaaaaccaaataaaaaatccGTTTAAAAATGGCGTTCCGGGCGAAGACTggtttttatcatttaaaaaacgTCACAATTTATCCGTTAAAAAACCCCAGGCAGTGGAAAACTCCCGAAAAAAAGCTTGCAATCCATGGGTGATTTACTCatattttgatttattaaaaactacaatGGATGAGTTGGGATTGCATGATAAACCATCACAAATATGGAACCTTGATGAGACTAGTTTTAGTAAAGATCCCAGTAAAACCAAAGTGGTGGGTTTGAGAGGATATGCCTCAACAAGAACTATTGCATCACCCGGAAAAGACAACACCACAGTTTTGTTGGGGTGCAGTGCAGCTGGTGACAAAACCCCAccattaattatatttaaaggAAAATATATCTGGGATGAGTGGACCACTAATGAGGGCTATCCAGGTACTGTTTATGCAGCCACTAAAAATGGATGGATGGAAACAGACATATTCCAAACATTTTTTGAAAGAGTTTTTTTGCCAATTGTAGGACAAAAACGGCCAATATTACTGGTATATGATGGCCATTCCACACATGTTGGTATCAATATAATCGAAAAAGCTCGTGAGGCAGATATCACAATCTTGAAAATCCCACCGCatacgagtgacaatttgcaGCCCTTAGATCTTGCTGTCAACAAATCTTTTAAGGACAAGTGGGATCTAAATTTAGTAAAATGGCAAAGGTTGAATGTGGGTCAAGCTTTACCTAAAAAAGACTTCTCAAAGTTAATTGGCAAAGTATGGGCGGAAGTGGACCCCAAAGTGTGTGCAGCTGGTTTCAGAAAAGCTGGTATTTTTCCTTTCAACGCCAATGCTGTGGCTGAAGAAAAGTTTCACCCAGATCAACTTCTGGAATGGAAAAAACAACAGCATAGTGAATTGAGCGAGACTATATGCGCTTCCCCTGTCTATTTGAAAAATTTCAACCCTCAAGATCAAACCACAGTTATTCAAGCAGTTCCTAGTACTTCGTACTCCGAAGACTTGTTTATTTTTCCTCATGAAACTGAAATACAGTCTGACAATAACATGGCATTTGACACCAACATGCAATCAAATATTCTTAGGCCATTACCATCATTACTAtctatttgtttaaataattggaATGGGCATGTCGAAAAACTTACTACACCTGAATATGAAGATATAGAACTTAAGGTAACCAGCTATAACCAATGCCTCAACCATGCGACGTGTAATAAAAACTTGTTTGAACATCCGTCACCTTCGCAAAACGTTAATGAGACATCACAACCTGTTAATTATAATGCGAAATATCTTAAATGTGTATCTCTTAATTATGATATACATAACAAAATTGAATCTAATGCTAATAAGTTATCAccagtaaaaattataattgaaGATGATCGTATCGTAAAATATAATATCACTTTTGAGGAACTATTACTCCAGAAAATAAAAGCTGGGAcgcaacacaaaaaaaaacgtactaAGGTCGCTGGCGGTGCCGAAGTCATAACATGTGAAGAGGtttataataaacaaaagaatattgagcaagaaaagttaaaaaagttGAAACAAAAGGAAAATAGACAAGAAAAGAAACTACAGAaagagaaaacaaaaaataaaaagatgaGAACCTCCAAAAGACAGTCAAAAGTATTATTAACAGATGATTCTACAGGTGGAAGTGACTATGCAGAAGTAGAAGATCAGAAGGAGATAAAAAAGGTGAGAAAATCgcagaattataaaaaaaaacaacgaaaaacaAAAGGTGATATGAAAAACAAAAcctcgcaaaaaaatataaaaataaaactggatGACTCGACAAGTGAAAGTGATATCGACATAGAGTATGAAGATGAAACTGACGTTGAAGGTATAGAACACTACTCAGAAAAAGAAGACGAAAACTCGGAAAAAGAAGACGACATGGAAACTAATAATTGTATGATCGTAGAAAATAAAGAGAACATCTGCAATGATTTTGATGAACCGTCAAAAAGTACCGTAGTCAAAGGACAATGGGTCTtgGGAGACGTCACATCCCCGAAACTGCTCACCACCGCACCGGAGGACGTCTTCAAGGTTCCGGACTGGAGAGGGCCAGGCATCAACGCCAACGGCGAgcacatcactcaccttcggcaTGCCGGCAATACAGTGGTCATGGCCGAGACCCTGTAG
Protein Sequence
MVRNYVRKTDRGKAYTKEKLLEAVEKVKNGELTAYRASINYRIPRPTIVARVYGRYGLKSDSLGRSTTIRKDVEQNLAQNLHQMERYGFGLSRKEIIELVGHYVTKNQIKNPFKNGVPGEDWFLSFKKRHNLSVKKPQAVENSRKKACNPWVIYSYFDLLKTTMDELGLHDKPSQIWNLDETSFSKDPSKTKVVGLRGYASTRTIASPGKDNTTVLLGCSAAGDKTPPLIIFKGKYIWDEWTTNEGYPGTVYAATKNGWMETDIFQTFFERVFLPIVGQKRPILLVYDGHSTHVGINIIEKAREADITILKIPPHTSDNLQPLDLAVNKSFKDKWDLNLVKWQRLNVGQALPKKDFSKLIGKVWAEVDPKVCAAGFRKAGIFPFNANAVAEEKFHPDQLLEWKKQQHSELSETICASPVYLKNFNPQDQTTVIQAVPSTSYSEDLFIFPHETEIQSDNNMAFDTNMQSNILRPLPSLLSICLNNWNGHVEKLTTPEYEDIELKVTSYNQCLNHATCNKNLFEHPSPSQNVNETSQPVNYNAKYLKCVSLNYDIHNKIESNANKLSPVKIIIEDDRIVKYNITFEELLLQKIKAGTQHKKKRTKVAGGAEVITCEEVYNKQKNIEQEKLKKLKQKENRQEKKLQKEKTKNKKMRTSKRQSKVLLTDDSTGGSDYAEVEDQKEIKKVRKSQNYKKKQRKTKGDMKNKTSQKNIKIKLDDSTSESDIDIEYEDETDVEGIEHYSEKEDENSEKEDDMETNNCMIVENKENICNDFDEPSKSTVVKGQWVLGDVTSPKLLTTAPEDVFKVPDWRGPGINANGEHITHLRHAGNTVVMAETL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00952656;
90% Identity
iTF_00952656;
80% Identity
-