Xxan009543.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990643.1:29847343-29847960[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-07 0.00054 21.6 0.0 1 41 8 47 8 50 0.88 2 2 0.11 1.3e+02 4.4 0.0 24 45 77 98 73 98 0.89
Sequence Information
- Coding Sequence
- ATGGCGCCTATTAAAAATTATACTCCTAAGCAAATGGGAGATGCCATTGAGGCGGTACGAGGTGGTGAACCTGTAGCGGCTGCAGCAAAGCGCTTTGGAGTTCCGCGGATCACTTTatacaacaaaatatcaggTAAAAACCCCATGCAATGTAGTATGGGACCAACTACTGTTCTAACAAGCACAGAAGAGGATTTGTTGGTAAAGTGGCTTTTAGCGATGGCTGAAAGAAGATTTCCTATCTCCAAAGAAACTCTCCTAAATAGTGTTCAGCGGATCATCACAGTGCAAAACAAATCCAACCCTTTCACGAAAAATAGACCAGGTAGAAAATGGTTTGAATCATTCTTAAAAAGACATCCCATAATAGCACAAAGAACAGGAGAAAATTTAACCGCTGCACGAGAGAACGTAACTGAAGAAGAAATAGTCTCTTGGTTTCGAGAGATACGCGAATATTTAACATCTGTCGATTTGCATCTGGTGCTCGAAGATCCAAGCAGAGTTTTTAACACAGACGAAAGCGCCTTCTTTCTTTCTCCAAAACCTGGACAAGTGCTTGTGAAGCGGGTGAGAAACATGTCTATGCTGCAAGTAGCGATGAAAAGGAGAATTTAA
- Protein Sequence
- MAPIKNYTPKQMGDAIEAVRGGEPVAAAAKRFGVPRITLYNKISGKNPMQCSMGPTTVLTSTEEDLLVKWLLAMAERRFPISKETLLNSVQRIITVQNKSNPFTKNRPGRKWFESFLKRHPIIAQRTGENLTAARENVTEEEIVSWFREIREYLTSVDLHLVLEDPSRVFNTDESAFFLSPKPGQVLVKRVRNMSMLQVAMKRRI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301103;
- 90% Identity
- iTF_00301103;
- 80% Identity
- -