Xxan045295.1
Basic Information
- Insect
- Xestia xanthographa
- Gene Symbol
- -
- Assembly
- GCA_905147715.1
- Location
- LR990659.1:18919585-18920208[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-10 3e-07 32.0 0.0 1 37 10 45 10 51 0.91
Sequence Information
- Coding Sequence
- ATGTCCAAGAGACCACTCCATCAATATAAAGAAGAACAATTGGCAGAGGCTATGGCGGCGATTAGAAAAGGGATGAAAACTAGAGAAGCCAGTCGAGTTTTTAAGGTTCCGCGAGGAACGTTACAGGATCGACTACATTTAAGGGTTCCAGATTTGCCCCGTAAAATGGGACCGGATTCAGTGCTGACCAAAACTGAAGAAACTGCATTGAAAGACTGGTGTATAGCATTAGCGAAATGTGACTTCCCATTAAAACGTGATGATCTCCTCAATACCGTCCATAATATTATATCTGAAGATaaaataccaaacccatttgtAAATAATAGACCAGGGAAGAAATGGTACCAATCATTTCTGAGACGAAATCCCGAGTTAAGTGAGAGGGCACCTGAAAATATATCTAAGGGTCGAGCCATTGTAACTGAAGAAGGTATTCGGAAGTGGTTTGCTGAACTTATGAAGCATTTAGAAGACATAAATGCAAGTGACATTTTGACCGACCCTGACCGAATATTTAACGGTGATGAAACTAGTTTTTATATATGCCCCAAGACTTTTACATACTTCCATTTAATATGCACTGAATTCGCTGGGGATATGTATGAAAATAtacctatataa
- Protein Sequence
- MSKRPLHQYKEEQLAEAMAAIRKGMKTREASRVFKVPRGTLQDRLHLRVPDLPRKMGPDSVLTKTEETALKDWCIALAKCDFPLKRDDLLNTVHNIISEDKIPNPFVNNRPGKKWYQSFLRRNPELSERAPENISKGRAIVTEEGIRKWFAELMKHLEDINASDILTDPDRIFNGDETSFYICPKTFTYFHLICTEFAGDMYENIPI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246777;
- 90% Identity
- iTF_01534732; iTF_00186096; iTF_01246777; iTF_01246819; iTF_01246778; iTF_01246779; iTF_00418900;
- 80% Identity
- -