Apul019426.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997771.1:2511144-2511734[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-09 1.1e-06 29.0 0.0 1 37 10 45 10 51 0.91
Sequence Information
- Coding Sequence
- ATGTCCAAGAGACCTATCCACCAATATAAAGAAGAACAATTGACAGAGGCTATGGCGGCGATTAGACAAGGGATGAAGATTAGAGAAGCTAGTCGAGTTTTTATGGTTCCGCGAGGGACGTTACAGGATCGACTACATTTAAGGGTTCCAGATTTACCCCGTAAAATGGGGCCAGATTCAGTGCTCACTAAAACTGAAGAAACCACATTGAAAGACTGGTGTATAGCATTAGCGAAATGTGGCTTCCCTTTAAAACGTGATGATCTCCTCAATACCGTTCATAATATTATATCTGATGATAAAAGACCAAACCCATTTGTAAATAATCGACCAGGGAAGAAATGGTACCAATCATTTCTTAGAAGAAATCCCGAGTTAAGTGAGAGGACACCTGAAAATATATCTAAGGGTCGAGCCGCTATTACTGAAGAAGGTATTCGGAAGTGGTTTGCCGAACTTGTGAGGCATTTAGAAGACATAAAGGCAACTGATATTTTGACCAATCCTGACCGAATATTTAACGGTGATGAAACTAGTTTTTATACAAGGTGGATACGACGGAGGGGCTTTTTTTTAAACTGCCTATACTAG
- Protein Sequence
- MSKRPIHQYKEEQLTEAMAAIRQGMKIREASRVFMVPRGTLQDRLHLRVPDLPRKMGPDSVLTKTEETTLKDWCIALAKCGFPLKRDDLLNTVHNIISDDKRPNPFVNNRPGKKWYQSFLRRNPELSERTPENISKGRAAITEEGIRKWFAELVRHLEDIKATDILTNPDRIFNGDETSFYTRWIRRRGFFLNCLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157147; iTF_00932372; iTF_00012874; iTF_00628176;
- 90% Identity
- iTF_01534736;
- 80% Identity
- -