Xrho003862.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970758.1:4867816-4876747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.009 0.92 11.1 1.9 1 23 200 222 200 222 0.98 2 29 0.0017 0.17 13.4 2.1 2 20 251 269 250 276 0.94 3 29 0.00014 0.015 16.8 0.1 2 23 302 324 301 324 0.96 4 29 0.0012 0.13 13.8 0.5 2 23 375 397 374 397 0.95 5 29 0.013 1.4 10.6 0.5 1 23 416 438 416 438 0.95 6 29 0.00016 0.016 16.7 3.5 1 23 478 501 478 501 0.95 7 29 0.0019 0.19 13.3 4.1 2 23 541 563 541 563 0.97 8 29 0.0024 0.24 12.9 0.6 1 23 613 636 613 636 0.97 9 29 0.0044 0.44 12.1 0.2 1 23 688 710 688 710 0.97 10 29 0.016 1.6 10.3 8.1 1 23 721 743 721 743 0.98 11 29 0.012 1.2 10.8 0.3 2 23 755 776 754 776 0.96 12 29 0.0032 0.32 12.6 1.4 1 23 786 808 786 808 0.98 13 29 0.0077 0.79 11.3 6.2 1 23 837 859 837 859 0.96 14 29 0.0019 0.19 13.3 2.5 1 23 870 892 870 892 0.97 15 29 2.6e-05 0.0026 19.1 0.5 1 23 900 922 900 922 0.98 16 29 0.00071 0.072 14.6 0.2 2 23 942 964 941 964 0.97 17 29 3.2 3.2e+02 3.1 0.3 1 23 982 1004 982 1004 0.89 18 29 0.24 25 6.6 3.6 1 23 1011 1033 1011 1033 0.93 19 29 0.0026 0.26 12.8 2.8 2 23 1044 1066 1043 1066 0.95 20 29 0.016 1.6 10.4 0.2 2 23 1089 1110 1088 1110 0.95 21 29 1.5 1.5e+02 4.2 3.6 2 23 1153 1175 1152 1175 0.95 22 29 0.0062 0.63 11.6 0.2 2 23 1191 1212 1190 1212 0.95 23 29 3.6 3.7e+02 2.9 4.1 5 23 1222 1240 1219 1240 0.94 24 29 0.015 1.6 10.4 0.8 2 23 1251 1273 1250 1273 0.95 25 29 2.3 2.3e+02 3.6 6.7 2 23 1290 1308 1290 1308 0.90 26 29 0.34 35 6.2 1.9 2 21 1312 1331 1311 1332 0.94 27 29 0.19 20 6.9 0.5 2 23 1381 1402 1380 1402 0.93 28 29 0.028 2.8 9.6 0.6 2 23 1413 1435 1412 1435 0.95 29 29 3.9 4e+02 2.8 0.9 2 20 1473 1491 1472 1493 0.89
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTCGGCGACTTTTACTCCATCTTCACGGTCGACAATGCTTTACAGCTGGCGGAGATGGCAATGGAATGTGCCCAGGTGAAAATATACGAAGGCGACGGGTTGCCTGATAAAGTGTGCTCAGAGTGCATACAGAAGCTCAGCAGTGCTCATATCTTTAAGCAGCAGTGTGAACGAGCTGACCAGGAGCTCCGCCGCAACTATGTGCCCCCACCCGGATTCAGCATCAGCCCGCCCAACAGACAGAGCAGCGATTCCGCCTTTTCCAATCACACTGATACCTCCAATTTGACCAAACCTCCATCTTCCATCGAGGAGAAAGTAACCCCCGCCACCAGAACCCGGAAACGTAGTGCGGACAGCGTCGACAACGCATCCACTGGCGGCGCCTCCAGCGACTACCGACCCAGCGGGTCCAAGCGAGTTGAGGAACTCCGACGCACCATAAAGAGACCCAGAAGACTTTCAGGACACGTCTCGCATTTAGATTCAGATTACGAAGATAACAGCCCCTCGTACTTAGCCGATACAGATTCCGACGAGCCCTTACTTAAAAATAGCTTCAATTGTGATCAATGCCCCAAACATTTCCTATCTCAAAGAAGTCTCGCTGTTCACAAGAGGATACACGACAAAAAAGAAAGTCTTGGCGAAAACGCCGTCGTAGATATACCACAGAGAGTAGAGGACGCCGTTGACGTGGAGGATAAACTGAACTGCGACAAATGTGGCAAGACATTCAAGTTAAAGATCATGTTGAAACGCCACCACGAAATATGCGGGAAGACTACAAATCCTATCAAGTCTCCACAGAAAGAGCTGCTAATCGCTCTGGAACCGATCGACGGCATGCAGAACCGGAATATTGTGTGCGAAATGTGCTCCGCCAAGTTCAAGACCGTTGACAATTTGGCGAAGCATATGAAGGTAGTTCATGCGGCCGTCTTGAAAAGAGAAGAAGATAAAAAACGAGAAAACGGAAAAGTGACAGTTCCTTGCATGTTCTGTAAGAAGCAGTTTGACGATTACTATGTTCACAATGCGCATTTCAACTCGTGTTCGAAAAGGGATGATTCTTTGCCACTTGAGTGTCCTGTTTGTAAGAAGGTAGTGATGAGAAAGAGCAATTATTTCCTACATCTTAAGAACTTGCATTTAGAGCCTCGGATGTCGCTGAAGAGCTCGGTGGAGCCGGTGGCACAGGAGTACCACGAGTGTAAGATGTGCTTCAAGAAGCTTCCGTCGCAAGCGTCGCTGATCACGCATCTGGCGGCGCACGTGTCGCAAATCGATGAAAATGACGGTGGAGCTGACAACGAATCTAGAACAAGCACTATAGACGACTCTGCATCCATCCAATCAGTACATAGCCAATCCCACACTCCCACCGCTCTATTTAAATGTCCAACATGTGACAAAGAGTTCAAATACAAGAAAGCTCTTCAAACTCACGAGGCTAGGTGTCATTCAGAAGTACCTGTGCTAGTTAAGGTAGAGCCACCTGATAAAGCATCGACGAGTCTTCTAAGTGAGACGGTTTATCGGCAGACTGAGTCAGAATCTAGTCAAGAAGAGGACGACAATACTTGTGATATCTGTGAGAAACAGTTCTCGTATCGTCGGCTCCTGCTCCACCACAAGAGAACCAAGCACAACATGAGCTCAGGACACAAGCGCGCCAAAATCTACCTCAAAGACTGCTCCGTGCGCTGCCTCATCTGCGACCTCGACATGAAGGTCGGAGCGATCAACGAACACAACCAGACGCATATAGCAAAGAACATGAAACCGAGGAACGTGTACACCTGCGCAGAATGCGAGGACACCTTCAAGAGCTGCTCTGCTCTCGCGAATCATATAAAGCTGATTCACCGACTAAAACAGAAACGGATCGAAGATACCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCCCTGGACTATATCCAGAGTCACAACGACTTTGGCGAGGTTCCGGGCGAGAGCAAGCCGCTGGTAGACCTGAGCGGCTTCACCTGCCCTATCTGCAGCAAGAAGATGCCAACTCTCATCTCTTTGAAGAGGCACGTCAACTGGCACTCCAATGTAGGCAATAGTATTGAGAAAAAGTACGAGTGTGTCGTCTGTAAGGAGtGCTTCAGGTTCAATTGCCACTATAAGATACACATGCGCGAGCACTACCACGACCCCAACCTGGACCCTAAGCACCTCACGTGCACCATCTGCGGGCGGCGCAGCAAGAACCTCCGCGCCGCGCAGGCGCACATGACCTACCACAAGCAGACGCGTTTCCAGAACAAGGACTACCAGTGCTCCATCTGCGAGCGAGTCTTCCAACACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGCGTTCACAACACCATCGTAGGCGACGTCATGCCCAGCAACGCTGACAAAACCGTCTTCGACGGCACGCACACCTGCCACCTCTGCGGCAAAGTCTGCGATTCAGAAAACTCGCTCAAACATCATCTCATCTGGCACAACTCCAAAACTTTCCTGTACGGTGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACTAACAAAAGAAGACTAGAAATTCACACCCGAGCCCACTTCGAGGATGAAAACGGTCCCTACAAGTGCACTATTTGTGGCAAGGGGTACACCGACGAGGGCTACTACCAAAAACATGTAAAGGGACACAATTTCGATCATCAGTCCCATAAAAAGAGGATAGACAAAATCAGAAAGGATAAAGTTAAATGTCCGATATGTACGCGGTACTACCCGGACCTGGTGAAGCTGATCCGTCACCTACGGCGCACGCACCCCGAGAGTAAGATGATCAAGTCTGACCCCGACGCTCCGCCGCCGCTCTACTACTCCTGCAAGTTGTGCGCCAAGATATTTCTAGACGAGCGAAGACTGCAGTCCCACGAGGAAGCACATTTAAGAAAGCCCGAGTTCTTTAAATGCAAGTTCTGTGGAAAGAAATACATATCGCTAAAGAGCCACACCATTCACGTTAAGGGTCATTTGGCGCAGAAGCATTACCACAACCCGCTGAAGTGTCCGCACTGCGACGAGACGTTCGTGAAGGGCTACGGGCTGCACCACCACCTGCGCGACGCGCACAACATCAACGAGAACTGGATCGCCGAGCGCACGGAGCAACCGCTTTCCGGCCCGCTCAAGGAGCTGCAGTGTTCCATCTGCATGAAGGTCCTCGCCAGCAAGGGGAACTACGAGCGACACATCGACTACCACAACTCCTTGAGATGTAACTACTGCTTCGATTACTTCAGCTCGCTCAGGTTCCTAGAAGGACATCTGGCGTTCTCGtgcgaaaagaaaaagctttTAGGCGATACCGAAGTTTACCCTAAGAAAGTGAAATGCAATATTTGTTACAAAGCTTTCCATGTTCAAGTGAAACTGGACTGCCATCTGCGCACGCAGCACGGCATCATCGTAGACAAGGAACGTTCCGCAGGCAAGCAAGAAATTGTCTGTGATTATTGCTTCAGAGTTTTCGAAAACGAGTATGCTCTGAGTACTCACAAGATTTACCATCGCACGATTGGCTTCTACGGGTGTATTTACTGCAAAAAGAAGTTTAATACATTGACTGTGTATCGAAAACACAAGAATCACCATATGGCGCAGCTTAATGTAGATAATCCAACGAAATGTGAACATTGTGACGAAACGTTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTGCACGGAGATGATAAGGAATGGTTCACAGAGCCCAAGGAGTCCATTGAGGAGACATGCCACATCTGTAACAAACGGTTCTACAATCTTCACAAACATCTGACTTACCATGAACAAAACAAGTGCAAGAAATGCAACGAGTATTTCTACTCCAGGGCGGACTTCGATAGTCATCTTTGCGCAATTGAAAGCGATGACGAAGGCACGGCATACGTGGGCAACGAGAACACGTTCCAATACGAGGAGTGCAGGTTCTGCTTTAAACCTATCACCAAGAAAAGCACGAAACGGCTTCACGACCAGATACACAAGGGTTCCGGCTCAATATCCTGTAGATTCTGCCCACTCAAGTTTAAAACTATGGACGCCTTTAACATACACGCTTTCTCTCATCGAAGCAGAAAATACAACAAGAAGCCGATAAAATGTCGGATATGCCGCGAAAAGTTCGTTAAATACGGACCATTTATGAAGCATATGAAGTTAGTTCATAAGTCGCCGAAGAAGATTCATTACCGAACGGTAGTAAAGCCGGAGAAATGTGTCGTTTGTGGAGATGACTTCCCGAATCTTCACAATCATTACCGCGCCCACTTGCTGAACCAGTGTCAGGGCTGTCTGAAATACTTTACTTCGTACAAGGCGATATCTGCGCACGAGTGCTCCAAAGAGGACTCCGACCCGTCGAAGGTGTTCACAAGCGACGCTAACTTGAACGAGCTGATAAATACATATGTTCCTAAAGACGAGAAGGATGATGAGAAGTACTACGGCCACACCGACGACGAGGAAGACGATGTTGAGCCGCAAGTGTTCGGCGAAGAAGAGGAGAGTCAGGAGAGTAAAGACATACCAATGCTCCAATCGCCGATCATATCGGATGTTCTGTCGCTGTTCAAGGCGGAGATGAACGGCTTGGGCGAGGTGGACGGCGTGGTGGATAACATGGATGAAGTTGTCGACATAACTGATGATGATTCGGTGGGAGTTGATGATTCCGTTATGCCAGTTATTGTCGTTATAGATGACGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECAQVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPNRQSSDSAFSNHTDTSNLTKPPSSIEEKVTPATRTRKRSADSVDNASTGGASSDYRPSGSKRVEELRRTIKRPRRLSGHVSHLDSDYEDNSPSYLADTDSDEPLLKNSFNCDQCPKHFLSQRSLAVHKRIHDKKESLGENAVVDIPQRVEDAVDVEDKLNCDKCGKTFKLKIMLKRHHEICGKTTNPIKSPQKELLIALEPIDGMQNRNIVCEMCSAKFKTVDNLAKHMKVVHAAVLKREEDKKRENGKVTVPCMFCKKQFDDYYVHNAHFNSCSKRDDSLPLECPVCKKVVMRKSNYFLHLKNLHLEPRMSLKSSVEPVAQEYHECKMCFKKLPSQASLITHLAAHVSQIDENDGGADNESRTSTIDDSASIQSVHSQSHTPTALFKCPTCDKEFKYKKALQTHEARCHSEVPVLVKVEPPDKASTSLLSETVYRQTESESSQEEDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHIAKNMKPRNVYTCAECEDTFKSCSALANHIKLIHRLKQKRIEDTVNPSDFCEVVVAKAEPLDYIQSHNDFGEVPGESKPLVDLSGFTCPICSKKMPTLISLKRHVNWHSNVGNSIEKKYECVVCKECFRFNCHYKIHMREHYHDPNLDPKHLTCTICGRRSKNLRAAQAHMTYHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVHNTIVGDVMPSNADKTVFDGTHTCHLCGKVCDSENSLKHHLIWHNSKTFLYGARHECTICKVKFTNKRRLEIHTRAHFEDENGPYKCTICGKGYTDEGYYQKHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKIFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKSHTIHVKGHLAQKHYHNPLKCPHCDETFVKGYGLHHHLRDAHNINENWIAERTEQPLSGPLKELQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDKERSAGKQEIVCDYCFRVFENEYALSTHKIYHRTIGFYGCIYCKKKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCHICNKRFYNLHKHLTYHEQNKCKKCNEYFYSRADFDSHLCAIESDDEGTAYVGNENTFQYEECRFCFKPITKKSTKRLHDQIHKGSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYNKKPIKCRICREKFVKYGPFMKHMKLVHKSPKKIHYRTVVKPEKCVVCGDDFPNLHNHYRAHLLNQCQGCLKYFTSYKAISAHECSKEDSDPSKVFTSDANLNELINTYVPKDEKDDEKYYGHTDDEEDDVEPQVFGEEEESQESKDIPMLQSPIISDVLSLFKAEMNGLGEVDGVVDNMDEVVDITDDDSVGVDDSVMPVIVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_00449498;
- 80% Identity
- -