Doo036997.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411710.1:6839527-6854763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0077 0.94 11.1 1.9 1 23 204 226 204 226 0.98 2 29 0.00086 0.1 14.1 0.8 2 20 255 273 254 275 0.92 3 29 0.00021 0.026 16.1 0.1 2 23 306 328 305 328 0.96 4 29 0.039 4.7 8.9 0.7 1 23 378 401 378 401 0.96 5 29 0.063 7.7 8.3 0.5 1 23 420 442 420 442 0.95 6 29 0.0012 0.15 13.6 3.0 1 23 482 505 482 505 0.94 7 29 0.045 5.5 8.7 4.1 2 23 545 567 545 567 0.97 8 29 0.002 0.25 12.9 0.6 1 23 617 640 617 640 0.97 9 29 0.0014 0.17 13.5 0.2 1 23 692 714 692 714 0.97 10 29 0.0044 0.54 11.9 8.4 1 23 725 747 725 747 0.97 11 29 0.019 2.3 9.9 0.8 2 23 759 780 758 780 0.96 12 29 0.0037 0.45 12.1 0.5 1 23 790 812 790 812 0.98 13 29 4.3 5.2e+02 2.5 7.3 1 23 841 863 841 863 0.93 14 29 0.003 0.36 12.4 2.8 1 23 874 896 874 896 0.97 15 29 1.6e-05 0.002 19.6 0.5 1 23 904 926 904 926 0.98 16 29 0.00061 0.074 14.6 0.2 2 23 946 968 945 968 0.97 17 29 0.96 1.2e+02 4.5 0.3 1 23 986 1008 986 1008 0.90 18 29 0.013 1.5 10.5 3.5 1 23 1015 1037 1015 1037 0.97 19 29 0.0038 0.47 12.1 3.2 2 23 1048 1070 1047 1070 0.95 20 29 0.014 1.7 10.4 0.2 2 23 1093 1114 1092 1114 0.95 21 29 1.3 1.5e+02 4.2 3.6 2 23 1157 1179 1156 1179 0.95 22 29 0.0053 0.65 11.6 0.2 2 23 1195 1216 1194 1216 0.95 23 29 3.1 3.8e+02 2.9 4.1 5 23 1226 1244 1223 1244 0.94 24 29 0.013 1.6 10.4 0.8 2 23 1255 1277 1254 1277 0.95 25 29 0.4 49 5.7 3.8 2 23 1294 1312 1294 1312 0.90 26 29 0.29 35 6.2 1.9 2 21 1316 1335 1315 1336 0.94 27 29 0.44 53 5.6 0.9 2 23 1385 1406 1384 1406 0.93 28 29 0.0029 0.36 12.4 0.5 2 23 1417 1439 1416 1439 0.95 29 29 3.7 4.5e+02 2.7 0.8 2 19 1477 1494 1476 1497 0.90
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTTGGCGACTTTTACTCCATCTTCACCGTCGACAATGCCTTGCAGCTCGCGGAGATGGCAATGGAATGCGCCCAGGTGAAAATATACGAAGGCGATGGGCTGCCTGACAAGGTGTGCTCAGAGTGTATACAGAAGCTCAGCAGCGCACACATATTCAAACAGCAGTGTGAGCGAGCTGACCAAGAGCTACGACGCAACTATGTTCCTCCACCTGGATTCAGCATCAGTCCGCCGCCACCCAACAGACAGAGCAGCGATTCCGCCTTTTCAAATCATACGGACACCTCTAACTTGACCAAACCCCCGTCTTCCATCGAAGAAAAAGTAACCCCCGCCCCCGCCACCAGAACCCGGAAACGTAGCGCGGACAGCGTTGACAATGCATCCACTGGCGGCGCGTCCAGCGACTACAGACCGAGCGGCTCCAAACGCGTCGAGGAACTCAGACGCAGCCACAAGCGACCCAGAAGACTGTCAGGACACATCTCGCAATTAGATTCAGATTACGAAGACAACAGCCCCTCGTACTTACCCGATACCGACTCCGATGAGCCCTTACTTAAAAATAGCTTCAATTGTGATCAATGCCCCAAACATTTCCTATCCCAAAGAAGCCTTGCTGTCCACAAGAGGATACACGACAAAAAAGAAAGTCTTGGCGAAAACGCCGTCGTTGATATACCGCAGCAGATAGAGGACGCGATCGACGTTGAAGACAAATTGAACTGCGACAAATGTGGCAAGACATTCAAGTTAAATATCATGCTGAAACGTCACCACGAAATATGCGGGAAGACTACAAGTTCCGTCAAGACTCCACAGAAAGAGTTGCTTATCTCCTTAGAACCGATCGACGGCATGAAGAACCGGAACATTGTTTGCGAAATGTGCTCGGCCAAGTTTAAGACTATTGAAAATTTGGCGAAGCATATGAAAGTGGTTCATGCTGCAGTTTTGAAAAGAGAGGATCTTGTTAAACGGGAAAATGGAAAGGTGTCCGTTCCATGCATGTACTGCAAGAAGCAGTTCGACGATTACTATGTTCACAGTGCGCATTTTAACAAGTGTCCGAAAAGGGACGACTCTATGTCGTATGAGTGTCCCATTTGCAAGAAGGTGGTGTTAAGAAAGAACTCTTATTTCTTACATCTTAAGAACATGCACTTTGAGCCTCGGATGTCGCTGAAGAGTTCGGTGGAGCCTGAGTCACAGGAGTACCATGAGTGTAGGATGTGCTTCAAGAAGCTTCCCTCACAAGAGTTGCTGATCACGCACCTGGCGGCGCACATGTCGAATATCGATGACAATGGTGGTGGAGCTGACAACGAATCTAGAGCAAGCACCATAGACGACAACGCGTCTATCCAATCAGTACAAAGCCAATCTCGCACTTCCACTGGTCTATTTAATTGTCCATCATGTGACAAAGAGTTCAAATACAAGAAAGCTCTTCAAACGCACGAAGCTAAGTGTCATTCAGAAGTACCTGTGCAAGTGAAGATAGAGCCACCAGATAAGGCATCGACGAGTCTCTTGAGCGAGACGGCTTATAGGCAGACTGAGTCGGAATCTAGTCAAGAAGAGGATGACAACACGTGTGATATCTGTGAGAAACGTTTCTCGTACCGCCGGATCCTCCTCCACCACAAGAGGACCAAGCACAACATGAGCTCGGGACACAAGCGCGCCAAAATCTACCTCAAAGACTGCTCCGTGCGCTGCCTCATCTGCGACCTCGACATGAAGGTCGGCGCGATCAACGAACACAACCAGACGCATATCTCAAAGAATATGAAGCCTAGGAACCTGTACACTTGCGCCGAGTGCGAGGATACCTTCAAGAGCTGTTCTGCCCTCGCAAACCATATAAAGCTGATTCACAGACTTAAACAGAAACGGATCGAAGATACCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCGAGAGCAAGCCTTTAGTAGATCTTAGCGGCTTCACCTGTCCCATATGTAACAAGAAGATGCCAACCCTCATATCTTTGAAGAGACACGTCAACTGGCACTCCAGTGTAGGCAATAATGTTGAGAAGAAGCATGAATGTTCCATCTGTAAGGAGACCTTCAAGTTCCAATGCCACTACAAGATCCACATGCGCGAGCATTACCGCGACACCAACCTCGACCCCAAGCATCTCACGTGCGACATCTGCGGGCGCCGCAGCAAGCACCTGCGCGCCGCGCAGGCGCACATGACTTACCACAAGCAGACGCGCTTCCAGAACAAAGACTACCAGTGCTCCATCTGCGAGAGAGTCTTCCAATACCGCAAGGTGTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGCGTCCTGAACACCATTGTAGGCGACGCCATGCCCAGCAACGCCGACAGAAGCATCTTCGACGGCACGCACACCTGCCACCTCTGCGGCAAGATCTGCGATTCAGAAAACTCCCTCAAGTGTCATCTCTCATGGCACACCTCCAAAACTTTCCTGTATGGCGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACTAACAAACGAAGACTAGAACTTCACACCCGAGCTCACTACGAAGACGATAACGGTCCCTACAAGTGCACCATTTGCGGCAAAGGGTACACCGACGAGGGCTACTACCAAAGACATGTGAAGGGACACAACTTCGACCATCAGTCCCACAAAAAGAGGATCGACAAAATCAGAAAAGATAAAGTTAAATGTCCAATATGTACGCGTTACTACCCAGACCTGGTGAAGCTGATCCGTCACTTGCGGCGTACGCACCCCGAGAGTAAGATGATCAAGTCCGACCCCGACGCGCCGCCACCACTCTATTACTCCTGTAAGTTGTGCGCCAAAGTATTTCTAGACGAGCGGAGACTGCAGTCCCACGAGGAAGCTCATTTAAGGAAGCCAGAGTTCTTTAAATGTAAATTCTGTGGAAAGAAATACATTTCGCTAAAGAACCACACGGCCCACATAAAGGGTCACTTGGCGCAGAAACACTACGACAACCCGCTCAAGTGTCCGCACTGTGACGAGAAGTTCGTGAAGGGCTACGCACTGCACCACCACCTGCGCGACGTGCACGACGTGCTCGAGAACTGGATCGCGGAGCGCACGGAGCAGCCGCTCACGGGCCCACTGAAAGACCTGCAGTGCTCCATCTGTATGAAGGTCCTCGCCAGCAAAGGGAACTACGAGCGACACATTGACTACCACAATTCTTTGAGATGTAACTACTGCTTCGATTACTTCAGCTCTCTCAGGTTCTTAGAAGGACATCTAGCGTTCTCGTGCGAGAAGAAAAAGCTCTTAGGCGATACCGAAGTTTACCCTAAGAAAGTGAAGTGCAACATTTGTTACAAAGCATTCCATGTTCAAGTGAAACTGGACTGCCACTTGCGCACGCAGCACGGCGTCATAGTAGACAGGGAACAGAGAGCAGGCAAGCAAGAAATTGTCTGTGATTATTGCTTCAGAGTTTTCGAAAACGAGTATGCCCTAAGTACTCACAAGATTTACCATCGCACGATTGGCTACTACGGGTGTATTTACTGCAAAAAGAAGTTTAATACGTTGACTGTGTATCGAAAACACAAGAATCACCATATGGCGCAGCTCAATGTAGATAACCCGACAAAATGCGAACATTGTGACGAGACGTTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGATGTACACGGAGATGATAAGGAATGGTTTACAGAGCCCAAGGAGTCCATCGAAGAGACGTGCCCCATCTGCAAGAAACGATTCTACAACCTTCACAAGCATTTGACTTACCATGAACAAAACAAGTGCAAGAAATGCAACGAATATTTCTACTCCCGGGCGGACTTCGATAGTCATCTTTGTGCCATTGAAAGCGATGACGAAGGCACGGGATACGTGGGCAACGAGGATGCGTTCAAGTACGAGGAGTGCAGGTTCTGCTTCAAACCTATCACCAAGAAGAGCACCAAGCGGCTACACGACCAGATACACAAGGGCTCCGGCTCTATATCCTGTAGGTTCTGCTCTCTTAAATTTAAAACTATGGACGCTTTTAACATACACGCATTCTCTCATCGAAGCAGAAAATACAACAAGAAGCCGATAAAATGTCGGAAATGCGGCGAGAAGTTCGTTAAATACGGACCATTTATAAAGCATATGAAGTTGGTTCACAAATCTACGAAGAAGATTCACTACAGAGCGATTGTGAAGCCAGAGAAATGTGTCGTTTGTGGAGACGACTTCCCGAATCTTCACAACCATTACCGCGCTCATCTGCTGAACCAGTGCCAGGGTTGTCTCAAATACTTTACTTCGTACAAAGCAATATCTGCGCACGAGTGCGACAAAGAGGACTCGGACCCGTCGAAGGTGTTCACAAGTGACGCTAACTTGAACGAGCTGATAAACACATATGTTCCTAAGGACGAGAAGGATGATGAGAAGTACTACGGCCACACGGACGACGAGGAAGACGATATTGAGCCACTAGTATTTGGCGAAGAAGAGGAAAGTCAGGAGAGTAAAGACATACCGATGCTCCAGTCGCCGATCATATCAGATGTTCTGTCGCTGTTCAAGACGGAGATGAATGGGATGGGTGAGGTGGATGACGTGGTGGATAACATGGATGACGTGGTCAATATAACTGATGATGACTCGGTGGACGTTGACGATTCCGTCATGCCAATTGTGGTCGTTATAGATGACGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECAQVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDTSNLTKPPSSIEEKVTPAPATRTRKRSADSVDNASTGGASSDYRPSGSKRVEELRRSHKRPRRLSGHISQLDSDYEDNSPSYLPDTDSDEPLLKNSFNCDQCPKHFLSQRSLAVHKRIHDKKESLGENAVVDIPQQIEDAIDVEDKLNCDKCGKTFKLNIMLKRHHEICGKTTSSVKTPQKELLISLEPIDGMKNRNIVCEMCSAKFKTIENLAKHMKVVHAAVLKREDLVKRENGKVSVPCMYCKKQFDDYYVHSAHFNKCPKRDDSMSYECPICKKVVLRKNSYFLHLKNMHFEPRMSLKSSVEPESQEYHECRMCFKKLPSQELLITHLAAHMSNIDDNGGGADNESRASTIDDNASIQSVQSQSRTSTGLFNCPSCDKEFKYKKALQTHEAKCHSEVPVQVKIEPPDKASTSLLSETAYRQTESESSQEEDDNTCDICEKRFSYRRILLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLKQKRIEDTVNPSDFCEVVVAKAEPLDWIQSHNDFGEVPGESKPLVDLSGFTCPICNKKMPTLISLKRHVNWHSSVGNNVEKKHECSICKETFKFQCHYKIHMREHYRDTNLDPKHLTCDICGRRSKHLRAAQAHMTYHKQTRFQNKDYQCSICERVFQYRKVYLSHMAIHYKKGDSVLNTIVGDAMPSNADRSIFDGTHTCHLCGKICDSENSLKCHLSWHTSKTFLYGARHECTICKVKFTNKRRLELHTRAHYEDDNGPYKCTICGKGYTDEGYYQRHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKNHTAHIKGHLAQKHYDNPLKCPHCDEKFVKGYALHHHLRDVHDVLENWIAERTEQPLTGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGVIVDREQRAGKQEIVCDYCFRVFENEYALSTHKIYHRTIGYYGCIYCKKKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICKKRFYNLHKHLTYHEQNKCKKCNEYFYSRADFDSHLCAIESDDEGTGYVGNEDAFKYEECRFCFKPITKKSTKRLHDQIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKLVHKSTKKIHYRAIVKPEKCVVCGDDFPNLHNHYRAHLLNQCQGCLKYFTSYKAISAHECDKEDSDPSKVFTSDANLNELINTYVPKDEKDDEKYYGHTDDEEDDIEPLVFGEEEESQESKDIPMLQSPIISDVLSLFKTEMNGMGEVDDVVDNMDDVVNITDDDSVDVDDSVMPIVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_01440329; iTF_01441321; iTF_00364274; iTF_00908156; iTF_00907249; iTF_01533277; iTF_00726718; iTF_00375580;
- 80% Identity
- -