Basic Information

Insect: Xestia rhomboidea
Gene Symbol: ham
Assembly: GCA_963853795.1
Location: OY970775.1:7484919-7528764[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.038 3.9 9.2 0.0 2 23 252 274 251 274 0.96

2 9 0.0011 0.11 14.1 0.8 1 23 281 304 281 304 0.93

3 9 2.2e-08 2.3e-06 28.8 0.1 1 23 310 333 310 333 0.96

4 9 1.9e-06 0.0002 22.7 1.7 1 23 339 361 339 361 0.95

5 9 6.8e-05 0.0069 17.8 6.1 1 23 367 389 367 389 0.99

6 9 0.00014 0.014 16.8 0.4 2 21 397 416 396 417 0.94

7 9 1.6e-08 1.7e-06 29.2 0.7 1 23 814 836 814 836 0.98

8 9 5.9e-07 6e-05 24.3 1.7 1 23 842 865 842 865 0.97

9 9 2.2e-05 0.0023 19.3 3.2 1 23 871 893 871 893 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.038	3.9	9.2	0.0	2	23	252	274	251	274	0.96
2	9	0.0011	0.11	14.1	0.8	1	23	281	304	281	304	0.93
3	9	2.2e-08	2.3e-06	28.8	0.1	1	23	310	333	310	333	0.96
4	9	1.9e-06	0.0002	22.7	1.7	1	23	339	361	339	361	0.95
5	9	6.8e-05	0.0069	17.8	6.1	1	23	367	389	367	389	0.99
6	9	0.00014	0.014	16.8	0.4	2	21	397	416	396	417	0.94
7	9	1.6e-08	1.7e-06	29.2	0.7	1	23	814	836	814	836	0.98
8	9	5.9e-07	6e-05	24.3	1.7	1	23	842	865	842	865	0.97
9	9	2.2e-05	0.0023	19.3	3.2	1	23	871	893	871	893	0.98

Sequence Information

Coding Sequence: ATGCTGAATTTTGATACGAGTTACAGAATGAAGATGTCTGCAGCAGACAGCCAGGAGTCTGGCAGCCCTCCGCCGAGCCCGACCGACTCTGCCACATCAGAATCAGCGCCCACCTTAGTTCACATCAAGCAAGAAAACATGCCTCCAGGAACAGATGTGAAGGAGTACTACGGTACCTTAGACTTCGGGTTATCAGACACATATCTAGCCAATAACTATGACTATGGAAGAGGATACCTACCTAGACCTGTAGACCACTTAAAGTCGGTCAAAAATGAGGATGGAACGAAGGACGATGACCCAGGGGATAGAGACTTCATATTACCTAGTGAATTGATGTTTAAAAGTGGAGGGATATTTGCTAGAGTGAATATTGCTAATGGAACTCAGTATGGACCTTTTCTGGGGTTGTTGGAGAATCAGCCAAAGGACAGGCGATTTGCTTGGGAGGTCCGAGACAAGAATGGCCTCAGTGGCTGGTTGGATGCTACTACAGAGAAAGGAAACTGGCTCAAACTGGTGCGCTCCACCAACTACCCTCATGATGTCAACGTACAGCATCTTATGTTGGCTGGACAGGTGTGGTACAAGGTTGTCCGCGAGGTGCCCTCCGGCCAGGAGTTACTTCTGGGTCCTCATACTCCTATATACTTGGACGACTTGCTCTCTTTGGACTCAAAGCGCCAGTTTTCTATCGAGAAGTTCAGTTCCCTTGCGTCTGCTGACGACGAGGAGAGAGAGGACGCTGACATCCGCTGCAGCTTCTGTGATCTACCCTTCCCCAACATCGATGTTCTCGATCGTCACTTGATAACGGAGCACGCTCAGCCGGCCGCTGCATTTCACTGCGAACTTTGCAACCGAGCTTACAGCACTCGAGTATTGCTCCTGCGACACCGTGCGCTTGCGCATACAGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCTCAGCACGCGGGCGCCCGCAGCCACGCCTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTGAAGCAGCACACGCACATACACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTTTGCTTTAAGGCTTACACTCAGTTCTCCAATCTCTGCCGGCACAAGCGGATGCACGTCGCTTGCAGAGCGCTCGTTGAATGCGGAAAATGTGGCCAGTCCTTCACGTCTTACGCCTCTCTTACTAAGCACAAGAGATTCTGTGACACCGCTGCAGCAGCTTCCGTTAACCTGCGAGGACAAATTCCCCAGGGCCTATCGCAAATACCGTCACTACAAAACGTCGGGATGAATAACCCTAACAACAGCAACCCGTTCCCGATGTACAGGGGACCCACTCTGCCCCTGCCGTACAACACGTTTGCCCACTACCCGGCGCTATTCTCTGCCGCCGCTGCTGCTGCCTGCCCACCCGAGTTCCTCAGCCCATTGCTGTTCAACGTACAAGGAGCCAGACTCGCTATGGAACATGATATGGCCATGTCAAATGCCAACTTAGTTTCCAAGCAGCAAGAAGGCCGCTTGTCAGTAAAAAGCATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGTCAAAGGATTTGGATTTCGAAAACAAAAGAGACAGCTATAGTTCAGATAGGGCTACGCCCAACAAATCACATAGTCTTTATTCCAAGCAATCGCCTCCTTCTGGAGAGGAAGCCTCGTCTCAACGCCGACCATCACCAGTCATGCCACTGCCTACACCGATTGCTCCATTCAATTTTGCAAGAGATGAAATGAAGAGGAAGTCACCGTACAACTTCTCTCTCAAGCTCAATAATAATGACATTCAGGGTAACAAGTCTCTGTCACCATTACCCAAAGACTTGTCCAAGAATGTTATCGAAGACGATAAAATGTCTGAATATTCTGATGTTGAAGAAGATACAAAGAAAGACGAAGGTGACCAGCCTTTAGATTTATCGGTGTCAAGGAAACAGAACGATAAGGATTCTGAAGCAGAGAATGACGAACGTTCCTTCCGCAACTCAGTCAAGTCTTATTCACCTCCTGAAAGCCCAGCCGAGAGGAGCAAGACTCCTGAAAATGACACAACAGACGTCGATGTTGAAGGCGTAGAACCTAAAAGGGAGGAATCGCCACCGCAGCTAGTATCACCACCACTCGCGTTCCCCATGCCCGTTCACCCGCAGCACAGCAACTTGATCGATGCCATGTACCGGCCTCGATTCCCTTCGTTCCACACTTCTGAATCGCTTCTGAACTCGTCGCACTCTCCTTATGTTCCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCTGACAGGCAATCAAGCGCGTATGCCAAGTTTCAAGAGCTTAGTTCAGGATCCGGAAAGCTGCGTGACCGGTATGCTTGTAAATTCTGCGGAAAAGTGTTCCCGCGAAGTGCGAACCTGACTCGTCACCTACGTACACACACCGGCGAGCAGCCTTACAAGTGCAAGTACTGCGAGCGCTCGTTCTCCATCTCTTCGAACCTTCAGCGGCACGTGAGGAACATCCACAACAAGGAGCGGCCATTTCGGTGTCCCTTGTGCGAGAGATGTTTCGGGCAGCAGACGAATCTCGATCGTCACTTGAAGAAGCACGAGGCGGAAGGTGGAGACTCTCCAAGCTCTGCTGATACTGAGAGGGAAGATGCGTATTTCGATGATATTCGGTCGTTCATGGGTAAGGTGACGTGTTCCCCGGGCGCGCGTTCCCCGGCGGCCACGCCCCCGCACGGCGGGCACGGGGCGCACGGGGCCCACAACGCGCACGGGGCCCACAGCGCGCACGGGGCCCACAGCGCGCACGGGGCACACGCCGCGCACGGCCCGCGTCCCTCACTTGCGATCTCCACATAG
Protein Sequence: MLNFDTSYRMKMSAADSQESGSPPPSPTDSATSESAPTLVHIKQENMPPGTDVKEYYGTLDFGLSDTYLANNYDYGRGYLPRPVDHLKSVKNEDGTKDDDPGDRDFILPSELMFKSGGIFARVNIANGTQYGPFLGLLENQPKDRRFAWEVRDKNGLSGWLDATTEKGNWLKLVRSTNYPHDVNVQHLMLAGQVWYKVVREVPSGQELLLGPHTPIYLDDLLSLDSKRQFSIEKFSSLASADDEEREDADIRCSFCDLPFPNIDVLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQIPQGLSQIPSLQNVGMNNPNNSNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKSKDLDFENKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVMPLPTPIAPFNFARDEMKRKSPYNFSLKLNNNDIQGNKSLSPLPKDLSKNVIEDDKMSEYSDVEEDTKKDEGDQPLDLSVSRKQNDKDSEAENDERSFRNSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQSSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGGHGAHGAHNAHGAHSAHGAHSAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441779;
90% Identity: iTF_00177403;
80% Identity: -