Xrho023514.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970774.1:13977923-13980292[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-07 0.00013 22.6 0.0 1 40 14 54 14 57 0.92 2 2 9.1 6.3e+03 -2.0 0.0 24 33 362 371 362 373 0.80
Sequence Information
- Coding Sequence
- ATGCCCAGGcattataagaaaaaaactaaTCGCACATTTTCTCCTGAGGCACTAAGAAAAGCCATAATAGATGTACGATCCAAAAAATTTAGCATCAGGAAGAGTGCGGCTGAACATGGTGTTAGCAAATCAAgactttttgattattttaaaaagactAAAGGTGAGGATAACATTGAGTCTGTTGATTTAACAACTAATTTCAGAAAAAGCCAAGTTTTTCCTCCATTCATGGAAGCTGCTTTGgctgaatatttaattaaatgctcAACAATGTTTCATGGTCTCACACCTAAAGCTACTAGACGCTTAGCTTATGAGTATGCAGAGAGAAATAATATAAAGTATCCGCCAAAATGGAAAGAAACCAAATCTGCAGGACCTGATTGGTTCTCATCATTTTTAAAACGTCACCCTACCCTTTCAATACGGACACCTGAAGCCACGAGTCTTGCACGAATGACGAGTTTCAATAGAACAACTGTAGCAGAATTTCAAAACAAGCTTGAAGATGTTATAACACGGTTTAATTTCACACCAACCCAGATTTATAATCTGGATGAAACCGGGATAACCACAGTGCAGCGTGTTCCGAAAGTCATTGCTCAAAAAGGGCAACATCAAGTAGGACAAGTGACCTCGCGAGAAAGAGGAGAGCTGGTAACACAGGTAGGAATCATAAGTGCAGCTGGTCATGCCTTACCACCGGTTTGGATATTTCCTCGTCACCGCTTTGACAAAAGGAAAATGATGCAAGGTATTCCAGATACTGCATGTCTTGGTTTGGTTTACCCTTCTGGCTGGATGACAAGTGAGAATTTTTTGAAGGTGTTAGAATATTTTGCTCGGAATGTGCGTTGTTCTATAGAAAACAAGGTCTTGTTAATCATGGACAACCATGAATCCCATCTATCAGTGGATGGATTaaatttctgcaaaacaaatGGGATCATCATTCTTACCCTGCCACCACACACGTCAAATAAGCTGCAACCACTGGATCGCACTGTGTTTGGGCCATTTAAGACTTTTTACAACAGTGGTTTGGATACATGGATGTTAGCACACCCTGGGCAAACTATTAGCATTTATGACATCCCACAAATTAGTCTTCTAGCTTGGGATAGAGCTGCCAATCCTATGAATGTAAAATCTGGTTTCAGATGCACAGGTATTTGGCCCTTTGATAGAAATATATTTACCGATGTAGATTTCTTATCATCCTATGTGACAGATCGACCGGAGACTGATCAATCTAATGTTCGTGCACAATCTCAAAACAGTGATGATGAATGTGTCTCACCTTCAGTGATTGGACAACTGTTTGCATCAGATCGGTTGGATGATGATGGCAATGATGCACAAACACTAGCGATTCCTACAGTTTACAGGACCCCATCAAGAACCCCATCAATTTCCTCAGTTCATAGTGCTGATGGTAATATCGACATGCCATCAACTAGTTCCAATGTTCCAGTTCCAGAAACAACCcgaaactataataaaaaaataattgccaaTGATCTATCAGATCgttcagatgatgatgagaattaTGAACTAACATCAGCAATTCTCACAGCTCATAGAACCCCATCAAAAACTCCATCAATTATCTCGGCTCATAGTGCTGATCTTAATATTAACGTGCCATCAACTTCGAATGTCCCAGGATCatctacaaacaaacataaagcAATAATTGATAAAGACTATATCTCAACTTCGCCAAGTCGACAAAGGTCCATCGATTCATTTGTTTCCCTTGAGCAAATTAGTCCTTTTCCGAAAGCAGCTCCACGGAAATTGAACATGAATAATCGAGGACGACGTAAAGGAAAATGTATGATAGCCACTGATACCCCTGAAAAGGAAGCACTTGAAGCTGCAAAAAAAGCAAGAATGACAAAGACATCAAAGAAGACGGTTAAGAAGAAGGTAACATCATCAGATGAGTCAACAGACCAACACATTTCTTCTAATGACAGTACATACGACATTGATGACGAAGAGTTAGATGACAACAATGCTGATACTTCTAATGTGCCTGAAGGGAGGTTTATAATTGTTAAAGTCTATGGATTTGGAAAAAAATCAGGCCGTAACTATGCAgcaaagattgtaaaaataacggCAGGTGGTTATAATGTCGAGTTTTATAAAAGGAAAATGCCTTCTAATAGATTTATACGAACGAATGAAGAAGAAGCATTCGTCACCTATGAGGATGTAGTGCTCGTATTGCCAGTTCCTTCAGAAGACAAGAGGCCTCGCTTTCAGGGCATGATATATTTCCATTGCAATTTGGATGAGTACCAACTACAgtag
- Protein Sequence
- MPRHYKKKTNRTFSPEALRKAIIDVRSKKFSIRKSAAEHGVSKSRLFDYFKKTKGEDNIESVDLTTNFRKSQVFPPFMEAALAEYLIKCSTMFHGLTPKATRRLAYEYAERNNIKYPPKWKETKSAGPDWFSSFLKRHPTLSIRTPEATSLARMTSFNRTTVAEFQNKLEDVITRFNFTPTQIYNLDETGITTVQRVPKVIAQKGQHQVGQVTSRERGELVTQVGIISAAGHALPPVWIFPRHRFDKRKMMQGIPDTACLGLVYPSGWMTSENFLKVLEYFARNVRCSIENKVLLIMDNHESHLSVDGLNFCKTNGIIILTLPPHTSNKLQPLDRTVFGPFKTFYNSGLDTWMLAHPGQTISIYDIPQISLLAWDRAANPMNVKSGFRCTGIWPFDRNIFTDVDFLSSYVTDRPETDQSNVRAQSQNSDDECVSPSVIGQLFASDRLDDDGNDAQTLAIPTVYRTPSRTPSISSVHSADGNIDMPSTSSNVPVPETTRNYNKKIIANDLSDRSDDDENYELTSAILTAHRTPSKTPSIISAHSADLNINVPSTSNVPGSSTNKHKAIIDKDYISTSPSRQRSIDSFVSLEQISPFPKAAPRKLNMNNRGRRKGKCMIATDTPEKEALEAAKKARMTKTSKKTVKKKVTSSDESTDQHISSNDSTYDIDDEELDDNNADTSNVPEGRFIIVKVYGFGKKSGRNYAAKIVKITAGGYNVEFYKRKMPSNRFIRTNEEEAFVTYEDVVLVLPVPSEDKRPRFQGMIYFHCNLDEYQLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00374020;
- 90% Identity
- iTF_00374027;
- 80% Identity
- -