Xrho023355.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970774.1:13195194-13197359[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 0.00012 22.7 0.0 1 40 14 54 14 57 0.92 2 2 8.4 5.8e+03 -1.9 0.0 24 33 362 371 362 373 0.80
Sequence Information
- Coding Sequence
- ATGCCCAGGcattataagaaaaaaactaaTCGCACATTTTCTCCTGAGGCACTAAGAAAAGCCATAATAGATGTACGATCCAAAAAATTTAGCATCAGGAAGAGTGCGGCTGAACATGGTGTTAGCAAATCAAgactttttgattattttaaaaagactAAAGGTGAGGATAACATTGAGTCTGTTGATTTAACAACTAATTTCAGAAAAAGCCAAGTTTTTCCTCCATTCATGGAAGCTGCTTTGgctgaatatttaattaaatgctcAACAATGTTTCATGGTCTCACACCTAAAGCTACTAGACGCTTAGCTTATGAGTATGCAGAGAGAAATAATATAAAGTATCCGCCAAAATGGAAAGAAACCAAATCTGCAGGACCTGATTGGTTCTCATCATTTTTAAAACGTCACCCTACCCTTTCAATACGGACACCTGAAGCCACGAGTCTTGCACGAATGACGAGTTTCAATAGAACAACTGTAGCAGAATTTCAAAACAAGCTTGAAGATGTTATAACACGGTTTAATTTCACACCAACCCAGATTTATAATCTGGATGAAACCGGGATAACCACAGTGCAGCGTGTTCCGAAAGTCATTGCTCAAAAAGGGCAACATCAAGTAGGACAAGTGACCTCGCGAGAAAGAGGAGAGCTGGTAACACAGGTAGGAATCATAAGTGCAGCTGGTCATGCCTTACCACCGGTTTGGATATTTCCTCGTCACCGCTTTGACAAAAGGAAAATGATGCAAGGTATTCCAGATACTGCAGGTCTTGGTTTGGTTTACCCTTCTGGCTGGATGACAAGTGAGAATTTTTTGAAGGTGTTAGAATATTTTGCTCGGAATGTGCGTTGTTCTATAGAAAACAAGGTCTTGTTAATCATGGACAACCATGAATCCCATCTATCAGTGGATGGATTaaatttctgcaaaacaaatGGGATCATCATTCTTACCCTGCCACCACACACGTCAAATAAGCTGCAACCACTGGATCGCACTGTGTTTGGGCCATTTAAGACTTTTTACAACAGTGGTTTGGATACATGGATGTTAGCACACCCTGGGCAAACTATTAGCATTTATGACATCCCACAAATTAGTCTTCTAGCTTGGGATAGAGCTGCCAATCCTATGAATGTAAAATCTGGTTTCAGATGCACAGGTATTTGGCCCTTTGATAGAAATATATTTACCGATGTAGATTTCTTATCATCCTATGTGACAGATCGACCGGAGACTGATCAATCTAATGTTCGTGCACAATCTCAAAACAGTGATGATGAATGTGTCTCACCTTCAGTGATTGGACAACTGTTTGCATCAGATCGGTTGGATGATGATGGCAATGATGCACAAACACTAGCGATTCCTACAGTTTACAGGACCCCATCAAGAACCCCATCAATTTCCTCAGTTCATAGTGCTGATGGTAATATCGACATGCCATTAACTAGTTCCAATGTTCCAGTTCCAGAAACAACCcgaaactataataaaaaaataattgccaaTGATCTATCAGATCgttcagatgatgatgagaattaTGAACTAACATCAGCAATTCTCACAGCTCATAGAACCCCATCAAAAACTCCATCAATTATCTCGGCTCATAGTGCTGATCTTAATATTGACGTGCCATCAACTTCGAATGTCCCAGGATCatctacaaacaaacataaagcAATAATTGATAAAGACTATATCTCAACTTCGCCAAGTCGACAAAGGTCCATCGATTCATTTGTTTCCCTTGAGCAAATTAGTCCTTTTCCGAAAGCAGCTCCACGGAAATTGAACATGAATAATCGAGGACGACGTAAAGGAAAATGTATGATAGCCACTGATACCCCTGAAAAGGAAGCACTTGAAGCTGCAAAAAAAGCAAGAATGACAAAGACATCAAAGAAGACGGTTAAGAAGAAGGTTTTGCaagaaaaaaagttgaaaaagaaaacgatTCCCCAGGTAACATCATCAGATGAGTCAACAGACCAACACATTTCTTCTAAAGACAGTACATACGACATTGATGACGAAGAGTTAGATGACAACAATGCTGATACTTCTAATGTGCCTGAAGGGAGGTTTATAATTGTTAAAGTCTATGGATTGGAAAAAAATCAGGCCGTAACTATGCAgcaaagattgtaa
- Protein Sequence
- MPRHYKKKTNRTFSPEALRKAIIDVRSKKFSIRKSAAEHGVSKSRLFDYFKKTKGEDNIESVDLTTNFRKSQVFPPFMEAALAEYLIKCSTMFHGLTPKATRRLAYEYAERNNIKYPPKWKETKSAGPDWFSSFLKRHPTLSIRTPEATSLARMTSFNRTTVAEFQNKLEDVITRFNFTPTQIYNLDETGITTVQRVPKVIAQKGQHQVGQVTSRERGELVTQVGIISAAGHALPPVWIFPRHRFDKRKMMQGIPDTAGLGLVYPSGWMTSENFLKVLEYFARNVRCSIENKVLLIMDNHESHLSVDGLNFCKTNGIIILTLPPHTSNKLQPLDRTVFGPFKTFYNSGLDTWMLAHPGQTISIYDIPQISLLAWDRAANPMNVKSGFRCTGIWPFDRNIFTDVDFLSSYVTDRPETDQSNVRAQSQNSDDECVSPSVIGQLFASDRLDDDGNDAQTLAIPTVYRTPSRTPSISSVHSADGNIDMPLTSSNVPVPETTRNYNKKIIANDLSDRSDDDENYELTSAILTAHRTPSKTPSIISAHSADLNIDVPSTSNVPGSSTNKHKAIIDKDYISTSPSRQRSIDSFVSLEQISPFPKAAPRKLNMNNRGRRKGKCMIATDTPEKEALEAAKKARMTKTSKKTVKKKVLQEKKLKKKTIPQVTSSDESTDQHISSKDSTYDIDDEELDDNNADTSNVPEGRFIIVKVYGLEKNQAVTMQQRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00374020;
- 90% Identity
- iTF_00374027;
- 80% Identity
- -