Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.6e-10 1.8e-07 31.8 0.0 1 42 18 59 18 62 0.89

2 3 2 1.4e+03 0.2 0.0 13 22 132 141 132 143 0.89

3 3 2.2 1.5e+03 0.0 0.1 14 23 142 150 137 152 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.6e-10	1.8e-07	31.8	0.0	1	42	18	59	18	62	0.89
2	3	2	1.4e+03	0.2	0.0	13	22	132	141	132	143	0.89
3	3	2.2	1.5e+03	0.0	0.1	14	23	142	150	137	152	0.73

Coding Sequence: ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaaCACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAAGAGACTCGAAAGGCTGGGCCGCATTGGTTAACATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAGACAGGTGTCCAGTTAACTAACTCTACTGGAAAAgtcataatcaaaatcaatcaaaatcaaagcatttatttcaaagatcTCAAGCTAAGATTCAGAGTAAAGTTCcagcaaaaaataataagaaaagacGAATAG
Protein Sequence: MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLTSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNVDETGVQLTNSTGKVIIKINQNQSIYFKDLKLRFRVKFQQKIIRKDE

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440933;
90% Identity: iTF_01440933; iTF_01264362; iTF_00622753; iTF_00622754; iTF_00622755; iTF_00622756; iTF_00622757; iTF_00622758; iTF_00622759; iTF_00622749; iTF_00622750; iTF_00622751; iTF_00622752;
80% Identity: -