Xash012866.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia ashworthii
Gene Symbol
clz9
Assembly
GCA_950022955.1
Location
OX465552.1:14042337-14044967[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.5e-08 3.5e-05 24.9 0.0 2 38 9 44 8 49 0.87

Sequence Information

Coding Sequence
ATGGCACCCAAACGAGATTATTCCAAAGAACAAATGATTAGAGCGATCGATGAAGTACAAAGAGGAGAAAAGGTGTCTGTAGCAGCTACCAAATATGGTGTCCCCAGAATAACTTTGAGAAACAAAGTTAAGGGGATAAGCCCGCTGGACTGTAACTTAGGGCCTTCCACAGTGCTGTgccaagaagaagaaaaagtatTGGTCAAATGGGTTTTATTCATGGCTGAAAACCATTTCCCAGTCACAAAGGATCATTTATTAGACAGTGtacaaaaaattattttggaaaaaaatttAGATAACTGCCCCTTCACAAATAATCGCCCCGGAAAAAAATGGTTTAGTTCGTTTTTGAATCGTCATCCAGAATTGGCGCAAAGAACGGCACAAAATTTGACAAAGGCCAGAGAAGACGTTTCTGAAGAAGAGTTGAATCGATGGTTTCAAACAATCAAGACATATATAGAAGGTAAAGGGTTATCAGATGCACTAAAAGACCCTACAAGGATATACAACACCGATGAAAGTGCTTTCTACTTGCAGCCTAAAGCAGGCAGAGTACTAGTACGTAAAGGAGAAAAAAACGTTTATAGTTCCTCTGGCGATGAGAAAGAAAACCTAACAGTACTAATTACTGCCAATGCTGCAGGAGTTATGCCTCCGCCTATGGTTGTGTATCCCTATGAAAGAATACCGACACTTATTGTCAAGAGTGTTCCTCGTGGATGGGGCATAGGGCGGTCGGAAACAGGATGGATGTGTGCAAAGACATTCTATGAATTTGTCACCAATGTTTTTAACCCATGGCTTATACAAAAAGAGATACTAAAAccggtcattttttttttggacggGCATAAGTCCCACATGTCGTTGCACCTTGCTAACTTTTGCAGAGATAATGGGATAGAGTTAATTGCACTTTACCCTAATTCCACTCACTTAATCCAACCTATGGACGTGGCGGTCTTTCGACCACTCAAAATTTCCTGGAGAGTTCAGATCATGAAATGGAAGTCTGAAAACCCTGGCGCACGTTTGAAAAAGGAAGATTTCGCGCCAAATTTGCAAGAGGCTTTAAAATGTATTTGCCCTGAAACCATAAAAAACGGTTTTCGTAAAAGTGGCCTTTATCcatttagctcggaatatgtgGATATGACTAAAATTGCTTCCCGCAATCGCACCATTAGATCTCAACCACCCCAGACAGAAGATACGATAAAAAAAACGCAATTTATGCAAACTTTAGAAGCAGAGATACAGAAAGTGTTTTCATCAGAAAAAATGACTCTTTTCAACCAACTGTACTTCATGCCTAGAGGTGAAGTTGAAAATTTACTGCCTGACGAAGATCAATCTCTTTATATTATATGGGCTAAAACCAAAAACATTTTGACTGGAACGCTTCCCATTTCAACTGATAATGATAATATGACGTGCCAACAACTGCCATCCCAGCCAATTGAAACGGAGTATGATCTGGCAACATCCGTTGTATCAAAAGATTTACCACAAATTACAGCGGAATATGATCTGGCAACATCCGTTGTATCGAAAGATTTACCACAAATCACATCGAAATATGATCTGACAACATCTGTTGTATCGAACGATTTACCACATATTACTGCGGAATATGATTTGACAACATCCGTTGTATCAAACGATTTACCACATAATACAGCGGAATATGATTTGACAACATCCGTTGTATCAAAAGATTTACCACAAATTACAGATGATTCAAACGTGGCTACGGCTACATCATCAAGAACACCAGATATATCAATACCACCGCTTAGAACTCACCAAAACCCCAGTGTGTCGCCTACTACAGATGGTTCCAACGCGGTATCAGCCACAACCACGTCCAGTACACCGCTTAAAACAAATCTTACGTCCAAATTATCCGCATCTACAACTACGCCAATTGGTGATATTCCGTCACCTTTTAAACGAGCCTTGTACTGGCCTGAACCAGAGATTAAAAAACGCCGTGTCAAGGAACGACTGCCGTCAGCAATCACCAGTGATCCCTACATAGATTAcgtacaaaaaaaagaaaacgaaaagaaacaaaagatagaagaaaaagaaaaacgtgcaaaagaaagaaaagaaaaacagttATTACGAGAAAAACTAGtgcaagaaaagaaaataaataaagaaagtaAGAAAGGCAAAGCAAAGACTAAAGCAGCAAAGTCAACAAAGAGGAAACAAAATATATCAAGTTCATCATCGGAGGAAATTAACACTGATGTTGAATATCAAGATAGTGAATATGATTTAGAAGAAGACCTGTCTGAATTTGGATCTGAAGAAGAAAAGATATCTTTGAAAACAATAGCACTGTCACAGAAGCAAACGAAAAGCAAATACGTAATAATAAGGTATGAAGGAGAATATTTTCCTGGCATAATTAAGAAAGCTGAGGGTAAACAATATGAAATAAGCACAATGGTGTTATCTAAAAGTAATACATTTCGTTGGCCAGAAACGCCAGACCAAATATGGTACGATGAGAAAGCAATAATAGAATTTATTAAAGAGCCAGTACAAATAAACAAACGTGGATTTTATAAAGTAGAAGAAATgaacaaatatttaccattcgtcttataa
Protein Sequence
MAPKRDYSKEQMIRAIDEVQRGEKVSVAATKYGVPRITLRNKVKGISPLDCNLGPSTVLCQEEEKVLVKWVLFMAENHFPVTKDHLLDSVQKIILEKNLDNCPFTNNRPGKKWFSSFLNRHPELAQRTAQNLTKAREDVSEEELNRWFQTIKTYIEGKGLSDALKDPTRIYNTDESAFYLQPKAGRVLVRKGEKNVYSSSGDEKENLTVLITANAAGVMPPPMVVYPYERIPTLIVKSVPRGWGIGRSETGWMCAKTFYEFVTNVFNPWLIQKEILKPVIFFLDGHKSHMSLHLANFCRDNGIELIALYPNSTHLIQPMDVAVFRPLKISWRVQIMKWKSENPGARLKKEDFAPNLQEALKCICPETIKNGFRKSGLYPFSSEYVDMTKIASRNRTIRSQPPQTEDTIKKTQFMQTLEAEIQKVFSSEKMTLFNQLYFMPRGEVENLLPDEDQSLYIIWAKTKNILTGTLPISTDNDNMTCQQLPSQPIETEYDLATSVVSKDLPQITAEYDLATSVVSKDLPQITSKYDLTTSVVSNDLPHITAEYDLTTSVVSNDLPHNTAEYDLTTSVVSKDLPQITDDSNVATATSSRTPDISIPPLRTHQNPSVSPTTDGSNAVSATTTSSTPLKTNLTSKLSASTTTPIGDIPSPFKRALYWPEPEIKKRRVKERLPSAITSDPYIDYVQKKENEKKQKIEEKEKRAKERKEKQLLREKLVQEKKINKESKKGKAKTKAAKSTKRKQNISSSSSEEINTDVEYQDSEYDLEEDLSEFGSEEEKISLKTIALSQKQTKSKYVIIRYEGEYFPGIIKKAEGKQYEISTMVLSKSNTFRWPETPDQIWYDEKAIIEFIKEPVQINKRGFYKVEEMNKYLPFVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00449028; iTF_01246799; iTF_01246798; iTF_00758097; iTF_00758098; iTF_00758099; iTF_01093982;
90% Identity
-
80% Identity
-