Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 7.3e-20 9.9e-16 59.7 0.1 1 66 88 151 88 188 0.83

2 2 9.2e-09 0.00012 23.6 0.0 64 122 200 265 188 269 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	7.3e-20	9.9e-16	59.7	0.1	1	66	88	151	88	188	0.83
2	2	9.2e-09	0.00012	23.6	0.0	64	122	200	265	188	269	0.86

Coding Sequence: ATGGAACACAGACCCTGCAGTTACGTAAGTGAGGCAGTTGCACGCATCGCACCGATTGCACCGATAGTACCCATCACACCGATTGCGCCTGTTACCTGCGCGGGCGCCGTCGGTACGATTCTGTATCCCAGCACCCAACCTTACCAAGTGATGGTTGGGAAATCTGTTAGCCCCAAAAGTGAGATGGTTACACCAGTAGCTTCGACGAGCAGTGGCTGCGCGGGCGCCGGTAGTGCGTTACGAAGCAACAGAGAGCCTTATGTGGAAATCGTTGAACAACCTAAACCGGGCAGGAGATTTCGCTATGACTCCGAGATCGCTTCAGCTGGGGCGATTCGTGGAGTGGAGTACAAGAACAACAAGTCATTCCCTAAAATCAAGATAGGGAACTACACAGGACCTGCCAAGATCACTGTGTCTTTAGTCTGTAAAGAAAAACCCTATAGCGCAAAGACTCCAGCGGCTTCTAGCCACCACAGCAGACTGGGTTTTGACATCCACACTGGGCGGCAGATCATACAGGAGTCTGAAGAGTATAATCGGACGCTCAGTCTTGCATTTGTGGACTATGAGAAGGCTTTTGACTCTGTCGAGACATGGGTGCACCCTAATGGCATTGTGGGCAAGAAGAAATTGTTAGAAGAAGACTTCACTTACATTTACGTCAAAAGGGTTCTGGTCACAAGGGACAACTGCGTAATTCAGTTCGATGACCTCGGCATTCGGATCGTGAAACCAAATCAGATCAAAGAGGCACTCCGGCTTAGAAAAGCCCAAGGAATCGATCCGTTTAAACgcacggagatctaa
Protein Sequence: MEHRPCSYVSEAVARIAPIAPIVPITPIAPVTCAGAVGTILYPSTQPYQVMVGKSVSPKSEMVTPVASTSSGCAGAGSALRSNREPYVEIVEQPKPGRRFRYDSEIASAGAIRGVEYKNNKSFPKIKIGNYTGPAKITVSLVCKEKPYSAKTPAASSHHSRLGFDIHTGRQIIQESEEYNRTLSLAFVDYEKAFDSVETWVHPNGIVGKKKLLEEDFTYIYVKRVLVTRDNCVIQFDDLGIRIVKPNQIKEALRLRKAQGIDPFKRTEI

Sequence clustering based on sequence similarity using MMseqs2