Basic Information

Gene Symbol
stc
Assembly
GCA_963575645.1
Location
OY754466.1:21080923-21097268[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.7 2.3e+04 -3.9 0.5 15 18 526 529 525 530 0.79
2 17 2 2.6e+04 -4.4 1.6 15 19 554 558 553 558 0.81
3 17 0.2 2.7e+03 -0.9 0.7 4 10 587 593 586 595 0.94
4 17 0.0001 1.3 9.6 20.4 3 18 603 618 589 619 0.88
5 17 2e-08 0.00026 21.4 10.8 3 18 657 672 655 673 0.92
6 17 1.2 1.6e+04 -3.4 1.2 6 10 703 707 702 707 0.90
7 17 2e-06 0.026 15.0 12.7 1 18 713 730 713 731 0.92
8 17 7.7e-06 0.1 13.2 13.6 4 18 780 794 773 795 0.86
9 17 1.6 2.1e+04 -3.8 2.0 5 10 824 829 824 829 0.93
10 17 0.0013 16 6.1 7.9 1 11 835 845 835 846 0.96
11 17 0.5 6.5e+03 -2.2 0.5 4 10 850 856 849 856 0.91
12 17 3.4e-10 4.5e-06 27.1 10.8 1 18 862 879 862 880 0.97
13 17 0.8 1e+04 -2.8 1.0 5 10 908 913 908 913 0.92
14 17 2 2.6e+04 -4.5 8.8 10 19 927 937 916 937 0.83
15 17 1.5 1.9e+04 -3.7 0.6 5 10 962 967 962 967 0.79
16 17 2.1e-07 0.0027 18.2 9.0 1 16 973 988 973 998 0.89
17 17 1.9e-06 0.025 15.1 12.8 1 19 1005 1024 1005 1024 0.93

Sequence Information

Coding Sequence
ATGGCCCACTGGAATCCATTATATGGTGCATCACCAAACCAAAATCCTTCATATTTTACAAGCGAGGAACAAACTGAAAGGGCTGAATTGCCATTTTTTAATGCTGAAAATAACGGTTTCAATTGTCCTAATAACTATCAATCTGTAAATTACAACGGATATTATACACCAAATGGTGTAAATCCAACATTTCCGAACGTAAATTATAACAACTCCTATTTTAACGTTTATCCAGTTCATCAACGTTTAGATTCGCAACAAATTCGATATTTACAAAGCTTTACAACTAATAATCAGATAAGTCAAAATGTAAAAGAGATTTCTAACGCAGCACCAAGTTTCAgtgaaaaatctaataatattaCCTCAAATAATGAACGATCAATTTCGAACAAAAACGCATACACCAGGAATACGCCTGTTTTCAACGAGAGAAAagacaattttcaggaaaataatAGTGACAAATTGCaatataaaaattctgaaaatttttcagATAGTAAAGTGGACAGTTCAGAATTAAATGTAGATTTAGCTAAAAAATCTACTCTAACTGCAACTGCTGCAGAGTTCAAGCCGGGCAGTAGCAAAGACAGTGAGGTCATCACTCAAAATGATCAGCAACAAAGCAACACTGGCGCTATTAAAAGATCCAAAAAAAGTAGTCCGACAACTAATTTGAAAGTTAAGAAGCCTCCTGGAAGTCAATCATACCATGACAGGAATTATATTGAATCAAGAACGTTTCGATCAGAAACTGATAATTCTCGAAATTTGCAACAATTCAGCGGTGATGCTTCTTACAACACGAAATATTCTAAATCGTATGCAAACGAAAATAGATTTAATTCGTACCGCAAAAATGAATATGTCAAGCCAAAATTTGATTCAAACGATTTCAAACGAAGTGACCAATCTGAAAATTATCGAAATGCTAGGAGTGACTATAGAAATAGTAGAAATAATAGTCAAGAGTCTGATAGAAATGATTATAGGAGTAATAGAAACAGCAATTATGATATTGAAAGAAAggtcaataataaaaaaggaCCTGGAGACAATGAGAAAACTCAGTCAAACAATTTTAACACTCCAAACAGCTCTGATATTTCCTCGAATTGGAGGAGTGAACCAAGATCAAATGATGACAATGCcagaaacaataaatttaataacagaTATGATAGAAAATCAAACGCAAATGATAAtagtagaaattttaaaaatgaaactcAAGTGTATTCCTCTAGAAAAGCAAACTACAACAACAGATATAATGATAATTCTAAAAGATCTAATTCAAAGAATTTATCACAAAACAGTGCTAGATTTTATAGTGATAAATCGCACAACAATAAATCTTCCAGGAATAATGACaattacaataaagaaaatcatGGAAACTCTTCTAATAAGCAAGAAAACAAAAAGTCATTAATCGATCATAAGAAGAATGATAAATTGAGTGACGCAGTCTCTCAACGAGAACGCCTGATGCAACAAGTGACAAGAGGAACACTGGAGTGTCTTGTTTGTTGTGAACGCGTTAGACCTGTTGATCATGTGTGGTCGTGTCAAAACTGCTATCACATATTACATTTACGCTGCATTCAAAAATGGGCTACTTCATCAACTCAAGCCAATATTGGTTGGCGTTGTCCAGCCTGTCAACATGTCAGCAAAGACATTCCATCTGAGTATAGATGTTTCTGCGGCTCTGTCCGGGAACCTCAGTACAATATAGCGGATGTGCCGCATTCGTGCGGAGAAACTTGCGGCAGGAAGTCTCGACGAATCAAGTGTCATCATCGCTGCACTGTTCTATGCCATCCTGGCCCTTGTCCTCAGTGCGAAACATTCGTTACaagatcGTGTGGCTGTGGAAAAACAGAACAAACTGTGCCTTGTAATCGCGAAGAAACTCTAAGCTGCGGTAAATTGTGTGATAAAATGTTGAACTGTGAACTCCATAAATGTGAGAGATTATGTCACGAAGGTGATTGTGAGCCCTGCGCGGAAAAAGTGATCCAAGTTTGTTACTGCGGGAAATCAAAACAGGAACTGGATTGCACAGCTGAAACCATAAGCATAACGAAATATGAGTGCAATGAAGTGTGCAGCCGTACTTTAACTTGCCGAAACCATGAATGTAGTCGTCCCTGTCATGACGGAGACTGCGGTGATTGTGAACTGTCTCCGACTCTAGTAGACACGTGTCCTTGCGGACAGACGCCTCTAACAGAAGATCAAAAGCGTACATCGTGTCTTGATCCAATTCCTTGCTGCGATAAGATTTGTTCAAAGAAATTGAAATGCGGGCAGCCAGTCAGTCCGCATCAATGTCTTGCCAAGTGCCATTTAGGTCCATGCCCCCCGTGTGAATTGAGCACTTTGGTACGATGCCGGTGTGGCCACATGGATCGGGAGTTGCCTTGTATCCAACTCACCGGAAGACCTGATGATGCTCGTTGCGAGAAGAAATGTAATAAGAAACGATTGTGTGGTCGCCACAAGTGTAATCAAATGTGCTGCATTGAAGTAGACCACGAGTGTCCTCTAATTTGCAATCACATGTTATCGTGCGGTCTGCATAGGTGCGATCAACTTTGTCATCGGGGACGTTGCCAACCGTGCTATAGATCGAgTTTTGAAGAATTGTATTGCGAGTGTGGAGCAAGCGTGATTTATCCTCCGGTAGCGTGTGGAACCAGAAGACCCACATGTGACAAGCCTTGTAGCAGGACTCACAATTGTGATCATCAAGTATCACATAATTGCCATAGTGAATCCGAGTGTCCCCCATGTACTGTTTTTACGCATAAATGGTGCCATGGTCAACATGAGATGAGGAGGACGATACCATGTCACATAGAAAATTTCACTTGTGGTCGTCCTTGTGGACGAGAATTACCATGCGGTAGGCATAAATGTCTTTTGATTTGCCATGCTGGACCATGTTTAGCTGACGGACAAACCTGTATGCAACCGTGTACTGTGTCACGGGCTTCGTGCAGTCACAATTGCGCTGCACCATGTCATGAAGGAGATTGTCCTGACACGCCTTGTAAAGAATCGgtgaAAGTATCGTGCCAATGTGGACATCGATCTACGATGAGATCTTGTGTGGAAAATGCTAAAGAATATCAGCGTATTGCCACTGCAATGTTAGCTTCAAAGATGGCTGATATGCAGTTGGGTCATTCAATTGATATTGGCGATATTGTTGGAAATACTAGTGCCAAAAAACAGGCTAGTCTTAAAACTTTAGAATGTAACGATGAGTGTCGATTAATTGAGCGTAACAGACGTCTCGCTATAGGGCTTCAAATACGTAATCCCGATCTGAGCGCTAAATTGACCCCGCGTTATACAGATTTTTTGAAACAGTGGGCTAAGAAAGATCCTCGATTTGTTCAGATGGTGCATGATAAATTGACAGAGCTTGTTCAGTTAGCTAAACAGtcgaaaCAAAAGTCACGCAGTCATTCCTTCGATATAATGAATCGTGACAAACGACAGTTCATTCACGAATATTGCGAACATTTTGGCTGTGAATCGGCTGCCTATGACCAGGAGCCCAATCGTAATGTAGTTGCTACAGCGTATAAAGACAAGgcCTGGCTCCCAAGTCTTAGTTTATTAGAAGTTCTTCAGCGAGAATCAGGTCAACGCAAAGTTCCTGGTCCGATGCTACAATCTGCACGGAGTAAAACTTCAGGAACATCAGAAAGTGTAACACTTCGTCTTCCCAGTCGTGACAAACTAGCCGCCGCACCTTCTTCGACTCAATCAACTCCACCAGAAGAGGACTACATAGACTATTTCAATTGCCCTCCCGAATAA
Protein Sequence
MAHWNPLYGASPNQNPSYFTSEEQTERAELPFFNAENNGFNCPNNYQSVNYNGYYTPNGVNPTFPNVNYNNSYFNVYPVHQRLDSQQIRYLQSFTTNNQISQNVKEISNAAPSFSEKSNNITSNNERSISNKNAYTRNTPVFNERKDNFQENNSDKLQYKNSENFSDSKVDSSELNVDLAKKSTLTATAAEFKPGSSKDSEVITQNDQQQSNTGAIKRSKKSSPTTNLKVKKPPGSQSYHDRNYIESRTFRSETDNSRNLQQFSGDASYNTKYSKSYANENRFNSYRKNEYVKPKFDSNDFKRSDQSENYRNARSDYRNSRNNSQESDRNDYRSNRNSNYDIERKVNNKKGPGDNEKTQSNNFNTPNSSDISSNWRSEPRSNDDNARNNKFNNRYDRKSNANDNSRNFKNETQVYSSRKANYNNRYNDNSKRSNSKNLSQNSARFYSDKSHNNKSSRNNDNYNKENHGNSSNKQENKKSLIDHKKNDKLSDAVSQRERLMQQVTRGTLECLVCCERVRPVDHVWSCQNCYHILHLRCIQKWATSSTQANIGWRCPACQHVSKDIPSEYRCFCGSVREPQYNIADVPHSCGETCGRKSRRIKCHHRCTVLCHPGPCPQCETFVTRSCGCGKTEQTVPCNREETLSCGKLCDKMLNCELHKCERLCHEGDCEPCAEKVIQVCYCGKSKQELDCTAETISITKYECNEVCSRTLTCRNHECSRPCHDGDCGDCELSPTLVDTCPCGQTPLTEDQKRTSCLDPIPCCDKICSKKLKCGQPVSPHQCLAKCHLGPCPPCELSTLVRCRCGHMDRELPCIQLTGRPDDARCEKKCNKKRLCGRHKCNQMCCIEVDHECPLICNHMLSCGLHRCDQLCHRGRCQPCYRSSFEELYCECGASVIYPPVACGTRRPTCDKPCSRTHNCDHQVSHNCHSESECPPCTVFTHKWCHGQHEMRRTIPCHIENFTCGRPCGRELPCGRHKCLLICHAGPCLADGQTCMQPCTVSRASCSHNCAAPCHEGDCPDTPCKESVKVSCQCGHRSTMRSCVENAKEYQRIATAMLASKMADMQLGHSIDIGDIVGNTSAKKQASLKTLECNDECRLIERNRRLAIGLQIRNPDLSAKLTPRYTDFLKQWAKKDPRFVQMVHDKLTELVQLAKQSKQKSRSHSFDIMNRDKRQFIHEYCEHFGCESAAYDQEPNRNVVATAYKDKAWLPSLSLLEVLQRESGQRKVPGPMLQSARSKTSGTSESVTLRLPSRDKLAAAPSSTQSTPPEEDYIDYFNCPPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01511889;
90% Identity
iTF_01511889;
80% Identity
-