Xxan022585.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:17108377-17109522[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.027 21 5.9 0.0 22 44 157 179 151 187 0.83 2 6 0.012 9.1 7.0 0.1 23 43 186 206 182 212 0.90 3 6 2.5 1.9e+03 -0.4 0.1 21 43 240 262 233 267 0.77 4 6 0.047 36 5.1 0.2 21 43 268 290 261 301 0.86 5 6 0.062 47 4.7 0.0 25 48 328 350 321 354 0.86 6 6 0.0017 1.3 9.7 0.3 18 43 349 374 347 380 0.88
Sequence Information
- Coding Sequence
- ATGACAAGTCGTAGCAGCTCTAGTaaagatataaatattaagGATGCGGCTCCCAAACAAGAAAAAATCGATAATGAACTCGAGAAAACAGAATTGGGAGTTAAGAGTACAACATTTAAATATGAAGACGTGGATTTTACTGGCAATGAAGTTGTAACCAATTACAAACCTCAAGCGGTATGGTTAATAGACAAAACCTTTGATTTATCGTCGAGTACTGTAAAATGTGAGCCTCAGTTTATTGATCCTTTCGATAACGAAACTAATGTAAAACAGGAAAATGACGCCACATCGGTTTTTGTAttgattaatgaaaataatacacACAGTAACGATAGTGGTGATGATATATTAACGATGAATGAAAAACTAAACATTCCAAAGGAAAAGTTATATCATTGtgatatttgcagtaaacctttTGCCGATAAAAGATGGCTCAACATTCACAAAGTTACACATTTTGGAGACAAACCGTACGAGTGCGACATCTGTTATAAATCATTCACCAGTTCAGCTTATTTAAACAAACACAAGCTTATACATACAGGAAAGAAACCGTACCAATGTGATGTTTGCAACAAATGTTTTAACCAATCAAACAATCTAACTAAACACAAGTTTACTCATACTGGTATAAAACGTTATCATTGCTATACTTGTAAAAAGAGTTTCACCGAATTGAGCAGTTTAAATAGACACCAATtaacacacactggtgagaaaccgtatgagTGTGATGTTTGTAACAAATGTTTTATTGCATTATTTGACTTGAATCGACATAAGTTAAAGCATACTggggagaaaccgtatcagtgtgacgtttgtaataaatgttacacTCAGTCGGGCagtttaaataaacataaacttgcacatactggtgaaaaacgcCATgtgtgtgacgtttgcaataaaCGCTTCTCCCGACAAAGTATTTTAAACATTCACAAGGTTACGCATACTGGGGAGAAACTttataagtgtgacgtttgtaacaagtcTTTCACCCAATCTGgtaatttaaatactcacaagctaagacatactggtgagaaaccgtaccagtgtgacgtttgtaatgaGTGTTTCAGTTATtcaagaaatttaaataaacacaaacttACACATGCTAGTGAGTAA
- Protein Sequence
- MTSRSSSSKDINIKDAAPKQEKIDNELEKTELGVKSTTFKYEDVDFTGNEVVTNYKPQAVWLIDKTFDLSSSTVKCEPQFIDPFDNETNVKQENDATSVFVLINENNTHSNDSGDDILTMNEKLNIPKEKLYHCDICSKPFADKRWLNIHKVTHFGDKPYECDICYKSFTSSAYLNKHKLIHTGKKPYQCDVCNKCFNQSNNLTKHKFTHTGIKRYHCYTCKKSFTELSSLNRHQLTHTGEKPYECDVCNKCFIALFDLNRHKLKHTGEKPYQCDVCNKCYTQSGSLNKHKLAHTGEKRHVCDVCNKRFSRQSILNIHKVTHTGEKLYKCDVCNKSFTQSGNLNTHKLRHTGEKPYQCDVCNECFSYSRNLNKHKLTHASE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530909;
- 90% Identity
- iTF_01530909;
- 80% Identity
- iTF_01530909;