Xxan023033.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:21429512-21430702[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.21 1.6e+02 3.0 0.0 27 43 174 190 169 196 0.87 2 8 0.009 6.9 7.4 0.0 14 47 189 222 188 227 0.82 3 8 0.12 89 3.8 0.0 21 48 224 250 222 252 0.91 4 8 0.0041 3.1 8.5 0.1 21 46 252 277 249 283 0.85 5 8 0.079 60 4.4 0.0 21 48 280 306 276 312 0.86 6 8 2.5 1.9e+03 -0.4 0.0 21 43 308 330 304 337 0.80 7 8 0.16 1.2e+02 3.4 0.1 21 48 336 362 333 365 0.90 8 8 0.028 21 5.8 0.7 21 44 364 387 361 393 0.88
Sequence Information
- Coding Sequence
- ATGGAATCTGATTATTCAAAACAAGTATCAGTGGATCCTGAAATCCCATTAAAAtacgaaattaaaaaagaagacACTACAATATCAACAGATTATAAGCCTTTGAACAGTATCGAAACAGTTTGGTTAAAAACTGCTGAACAAGTTTcgataaaaactgaaaatgttgATGAAGAATTCAAGATTAAAGAAGAACCGGCGGACGACGATTCAGTATATCAAAACGTTgctgaaacaaatgaatattcaGTTGTTAAGCATGAATATGATGATACCGATGTGAAGTTGGAAACAGATGCCAATATATTCAGCAACGGTAACGATTTTACAGATATACAAGATCACTTCATATTAACACACGGTCCCAATGAACACGAGGAGGTTAATGTACCCAAAGCACAGGAAAACAGCATCAAGATTACAAAATTGGTTTactgtgacgtttgcaataagtCTTTCACAAGATCTAGTAGCTTGGCTAACCACAAACGATTACATACCGGCAAGAAACTatacaaatgtgaattttgtaatAACGTTTTTTCTCAATTGTCGaacttaaaaaaacacagactacaacatactggtgagaaaccgtttcaGTGCGATATATGCCTCAAGGGTTTCACACGATCAAGTAGCTTGAGGGatcataaatttttacataccggtgagaaaccgtataagtGCAAGTCTTGCGATAGTAGTTTTACTCAGTTCTCGAACCTGCACAAACACGAACTgcaacatactggtgagaaaccgtaccagtgtgacgtttgcaataagtTTTTCACGCGGTCACGTAATTTGACAGATCACAAACGAATACACACTGGCGAAAAACCGTATAAGTgtaatttatgtaataaaagttTTACTCAGATGTCTAACGTAAAAAAACATCAATTGcaacataccggtgagaaaccttttAAGTGCGACACTTGCAACAAGTGTTTCACGCGATCGAGTACCTTGAATGATCATAAACTTTTACATACCGGTGAGAGACCGTATAAGTGCAGCTCTTGTGATAATCGTTTTATTCAGCTatctaacttaaaaaaacacgaaCTTAagcataccggtgagaaaccgcaTCAGTGTGATATTTGCAAGAAATGTTTCACCCGTTCAAACTATTTACGTGTACATGTTTTACAACATGCTCAGGAAAAGCTGGAATAA
- Protein Sequence
- MESDYSKQVSVDPEIPLKYEIKKEDTTISTDYKPLNSIETVWLKTAEQVSIKTENVDEEFKIKEEPADDDSVYQNVAETNEYSVVKHEYDDTDVKLETDANIFSNGNDFTDIQDHFILTHGPNEHEEVNVPKAQENSIKITKLVYCDVCNKSFTRSSSLANHKRLHTGKKLYKCEFCNNVFSQLSNLKKHRLQHTGEKPFQCDICLKGFTRSSSLRDHKFLHTGEKPYKCKSCDSSFTQFSNLHKHELQHTGEKPYQCDVCNKFFTRSRNLTDHKRIHTGEKPYKCNLCNKSFTQMSNVKKHQLQHTGEKPFKCDTCNKCFTRSSTLNDHKLLHTGERPYKCSSCDNRFIQLSNLKKHELKHTGEKPHQCDICKKCFTRSNYLRVHVLQHAQEKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530919;
- 90% Identity
- iTF_01530919;
- 80% Identity
- iTF_01530919;