Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754466.1:19939458-19944808[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.2 2.5e+03 -0.8 0.0 6 32 140 167 137 185 0.69

2 11 0.093 71 4.1 0.0 26 51 284 309 275 312 0.85

3 11 1 7.9e+02 0.8 0.0 21 48 307 333 303 336 0.87

4 11 0.49 3.8e+02 1.8 0.0 16 51 357 393 352 394 0.84

5 11 0.057 43 4.8 0.3 23 52 394 423 391 425 0.84

6 11 2.1 1.6e+03 -0.2 0.1 22 46 421 445 416 453 0.82

7 11 0.26 2e+02 2.7 0.0 20 48 475 502 468 506 0.88

8 11 0.015 11 6.7 0.1 17 51 527 562 521 564 0.85

9 11 1.9 1.5e+03 -0.1 0.1 23 43 563 583 561 588 0.87

10 11 0.00038 0.29 11.8 0.1 21 52 589 620 581 622 0.86

11 11 3.3 2.6e+03 -0.8 0.0 21 43 617 639 613 644 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.2	2.5e+03	-0.8	0.0	6	32	140	167	137	185	0.69
2	11	0.093	71	4.1	0.0	26	51	284	309	275	312	0.85
3	11	1	7.9e+02	0.8	0.0	21	48	307	333	303	336	0.87
4	11	0.49	3.8e+02	1.8	0.0	16	51	357	393	352	394	0.84
5	11	0.057	43	4.8	0.3	23	52	394	423	391	425	0.84
6	11	2.1	1.6e+03	-0.2	0.1	22	46	421	445	416	453	0.82
7	11	0.26	2e+02	2.7	0.0	20	48	475	502	468	506	0.88
8	11	0.015	11	6.7	0.1	17	51	527	562	521	564	0.85
9	11	1.9	1.5e+03	-0.1	0.1	23	43	563	583	561	588	0.87
10	11	0.00038	0.29	11.8	0.1	21	52	589	620	581	622	0.86
11	11	3.3	2.6e+03	-0.8	0.0	21	43	617	639	613	644	0.82

Sequence Information

Coding Sequence: ATGAAAAATGTATGCCGAATTTGTTTACTTGAAAATGTGCAAACAAAATCTATATTTTctttggaaaaattagaaaattctgAACTGCAAATATCAGACATTATAATGGCATGTGCGTCAGTGCAGataaccATGGGAGATGGTTTACCTAGTGAGATTTGTGTTGAATGCAATAAAGAAGTGAAAATTATAAGCACCTTCAAACAGAAATGCGAAAAGTCAGATGCTTTACTTCGAAAAAGATTTGACAAATTGCTTTTACCTAAGAATGAGTGTTTTTCTGGATCAGAAATGCACGAAGAAATTGACATTAAGCCAGATATATATTCATATTCAAGTAATTTGGATGTATCCGATTCCGATTCTGAAGAAATGaaacatttaaatgaaattgacccacttacaacaaaaaatgatgCGAAATTCAACAGTGGCACAAGCGTACCTGCAAAAAGTGGTGGTGATTTATCAAAGATATCGAAATGTCCTCTTTGTGAGAAAAGCATGGCAACAAAATACATGAATAAGCATTTAAAGAATCATACAAACAGTAAGGAATATGAATGCGAACGCTGTTATAAAGGTTTTGCAAGAAAGGAGTCATTAATTCGCCACGATTCAGTACATGCAATTGATCTCACGTGCAGAAAAGATAAAATGAAAAAACCGGGCAGTAAAAAGAATAAGAAACAAATGCAAGACTCGAAGAAAAGGAGCATTAATGACGACAATCTAAATACTGTGAAAGATCAAGATCAAATATTTTCTTGCAATCAGTGTGACAAAACTTTTTCCAAAGAAAAATTTCTGACGCAACACGCAAATAGACATTCAAACATTGCAAAGTATGTTTGTGATGTATGTACCAAAGCGTTcaaacaacttagtaatttaaaaAGTCATTTAAGGACACACAATAAAGAAAAACCATTTCTTTGTTCGGTGTGTGGTAAAGGATTCACTCAAGTGGGACATTTGCAGGAACATATGTTACGTCACACCGGTATAAAAGCTCATGTGTGCAGTGTATGCAATATTGCTTTTGTTACTAAGGGAGAACTGGCGTCACATTCGAGAATTCACTCTGAAATACGACCGTATATCTGCGATGTTTGTGGGGCCGACTTTTTAAGACCTGATTCACTAACGAAACATAAGGAGGGCATTCATTTGGGGAAACGACCATATGAGTGTGATGTATGCAAAGCCACTTTCTCGCGATCGCACCATTTGGTTAGACATAAACACACACACAGTGCAACGAAACCATATTCATGCGAGTTCTGTACCAAGAAGTTTACTCAAAATCGCTATCTTGTTGAACACACTAGAATTCATACAGGTGAGCGACCGTATGTTTGTAATGGGTGCGGGAAAGGGTTTACTCAAGGGTCATCGCTAAAAACACATAAAAAgactCATAACAAAGAAAAACCGTTCCTATGTTCGACGTGCGGTAAAGGTTTTACTCAAGTAGGAAATCTACAAGAGCATATGTTACGTCACACAGGCATAAAAGCTCACATATGCAATGTTTGCGGCAATGGATTCGTCAGCAAAGGTGAACTGGTATCGCATTCGAGAACTCATTCAGGCATTCGGCCTTATATTTGTGACATTTGCAACGCTGATTTCCCGAGACCTGATTCATTAAGAAAACATAAAGAGGGCGTACATTTGGGAAAACGGCCCTATGAGTGCGACGTATGCAAAGCGACTTTTTCACGGCCCCATCATTTAGTTAGACACAAACGAacacatactggagagaaaccgtacacTTGTAAATTTTGTGCGAAAAAGTTTACACAAAGTAAAAATCTCGTTGAACATATTagaatacatactggtgaaaagcCGTATGTTTGTGATGTTTGTGGAAAGGGTTTCACTCAAGGGTCTCCGCTTAAAacccataaaaaaattcatatgaataaaaattcactgtcacaaaatataaacagtaccTAA
Protein Sequence: MKNVCRICLLENVQTKSIFSLEKLENSELQISDIIMACASVQITMGDGLPSEICVECNKEVKIISTFKQKCEKSDALLRKRFDKLLLPKNECFSGSEMHEEIDIKPDIYSYSSNLDVSDSDSEEMKHLNEIDPLTTKNDAKFNSGTSVPAKSGGDLSKISKCPLCEKSMATKYMNKHLKNHTNSKEYECERCYKGFARKESLIRHDSVHAIDLTCRKDKMKKPGSKKNKKQMQDSKKRSINDDNLNTVKDQDQIFSCNQCDKTFSKEKFLTQHANRHSNIAKYVCDVCTKAFKQLSNLKSHLRTHNKEKPFLCSVCGKGFTQVGHLQEHMLRHTGIKAHVCSVCNIAFVTKGELASHSRIHSEIRPYICDVCGADFLRPDSLTKHKEGIHLGKRPYECDVCKATFSRSHHLVRHKHTHSATKPYSCEFCTKKFTQNRYLVEHTRIHTGERPYVCNGCGKGFTQGSSLKTHKKTHNKEKPFLCSTCGKGFTQVGNLQEHMLRHTGIKAHICNVCGNGFVSKGELVSHSRTHSGIRPYICDICNADFPRPDSLRKHKEGVHLGKRPYECDVCKATFSRPHHLVRHKRTHTGEKPYTCKFCAKKFTQSKNLVEHIRIHTGEKPYVCDVCGKGFTQGSPLKTHKKIHMNKNSLSQNINST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530553;
90% Identity: iTF_01530553;
80% Identity: iTF_01530553;