Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754474.1:5846687-5848800[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.39 3e+02 2.1 0.1 17 43 276 302 271 308 0.80

2 6 0.2 1.6e+02 3.1 0.2 25 43 312 330 306 335 0.86

3 6 0.0073 5.6 7.7 0.2 21 47 336 362 333 368 0.85

4 6 0.17 1.3e+02 3.3 0.0 20 43 363 386 359 391 0.82

5 6 0.008 6.1 7.6 0.0 21 43 392 414 389 420 0.89

6 6 0.0009 0.69 10.6 0.3 21 43 420 442 417 447 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.39	3e+02	2.1	0.1	17	43	276	302	271	308	0.80
2	6	0.2	1.6e+02	3.1	0.2	25	43	312	330	306	335	0.86
3	6	0.0073	5.6	7.7	0.2	21	47	336	362	333	368	0.85
4	6	0.17	1.3e+02	3.3	0.0	20	43	363	386	359	391	0.82
5	6	0.008	6.1	7.6	0.0	21	43	392	414	389	420	0.89
6	6	0.0009	0.69	10.6	0.3	21	43	420	442	417	447	0.90

Sequence Information

Coding Sequence: ATGTGCAGATTGTGTCTATCATGGAATATGACTATGACTGACGTATTTTTGTTTTCCTCCGATTTGGGAAAGGAAATAGCAGATATTATAATGGAATGTGCTCCTGTTCAAATTACCAGACACGATAAGATGCCGACCTGTATTTGTCAATTATGTTTCAATCAACTGAAGAAATTCCACCAGTTTCAAATGCAAGCAGTGCAGTCTGATAGAACACTGCAACGATATCTACAACAGTCGAGCGTCTGCCATCCGCAGATTGAGGTTAAATCGACCCTCGAAGAACAAtcgaataattttgaaagtCAGAACTATAATGCTGATGTCGCTATAAAGCTTGAACCTTTTGAAATTAGTGATgagtttgatattttttcatcaaaacaaGAAGCGCTTGCAAATTTTAGCtcggaaaataaaattaaagaggaAATATCCttaaaatccgaaattaaaGATGAGCCAATGGATGATGATTCATTAATTCCAGCTGAGTGTGTTGAAACAGTAAAAACTCTATCAATGTATGCTGGCAGTGAAATCAGTTGCGAAGATTCAACGATTGAAGTTGGCGATACAAAAGTCAGAGACGTCATGACGGATAAAATACCGGTGAAATCGGAAGAAACAACGATACAGTTCAAACAAGTAGATAGTAACCCATCCTCCGAAGATATTAAAGACGTTGAATGTCTTCGTTCAAATGAAAATAATCTGAACAGAACAGAACGTAAAATTTCAAACGAAAAATTTCACAGTGCTTTATTAAAACAATCTGCAACTTCTACAGGGAGGAAACAAGCGATTCATCTTAAAAGACACAATTcaacacatacaggagagaaaccgtatcagtgtgacatttgtgaaaTGCGATTTGAACAGCTGGAAACTTTACAGAATCATAATTTaatacatactggagagaaactataccagtgtgacatttgtaaaaagtgtttcagatCGGCAGGTCAATTAAAGAGACATAATTTAATACATagcggagagaaaccgtacaagtgtgatatttgtcaaatgtgtttcagacaagCGATTCATCTAAAGGGTCACAAATCAATACATACAGGGGAGAAACCATAtgagtgtgacatttgtaaaatgcgATTTAGACAGCTGGGAATTTTACAGAATCATAATTTaatacatactggagagaaaccttaccagtgtgacatttgtcaaatgtcaTTCAGAGAGTCGGGAAGTTTaaagaaacataatttaatgcatacaggagagaaaccgttccagtgtgacatttgtcaaatgtgtttcagacaatCTCATcatttaaaaagtcataaattaatacatgcagtgtaa
Protein Sequence: MCRLCLSWNMTMTDVFLFSSDLGKEIADIIMECAPVQITRHDKMPTCICQLCFNQLKKFHQFQMQAVQSDRTLQRYLQQSSVCHPQIEVKSTLEEQSNNFESQNYNADVAIKLEPFEISDEFDIFSSKQEALANFSSENKIKEEISLKSEIKDEPMDDDSLIPAECVETVKTLSMYAGSEISCEDSTIEVGDTKVRDVMTDKIPVKSEETTIQFKQVDSNPSSEDIKDVECLRSNENNLNRTERKISNEKFHSALLKQSATSTGRKQAIHLKRHNSTHTGEKPYQCDICEMRFEQLETLQNHNLIHTGEKLYQCDICKKCFRSAGQLKRHNLIHSGEKPYKCDICQMCFRQAIHLKGHKSIHTGEKPYECDICKMRFRQLGILQNHNLIHTGEKPYQCDICQMSFRESGSLKKHNLMHTGEKPFQCDICQMCFRQSHHLKSHKLIHAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -