Xxan008797.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:1404228-1409148[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0033 2.5 8.8 0.0 21 47 188 214 180 220 0.85 2 15 2.4 1.8e+03 -0.4 0.0 22 49 217 244 214 249 0.77 3 15 0.32 2.5e+02 2.4 0.0 21 45 244 268 237 273 0.88 4 15 1.3 9.7e+02 0.5 0.0 21 43 340 362 328 367 0.85 5 15 0.0082 6.2 7.5 0.1 21 52 368 399 365 401 0.89 6 15 1.2 9e+02 0.6 0.1 21 31 396 406 394 422 0.82 7 15 1.4 1e+03 0.4 0.1 21 32 424 435 412 449 0.73 8 15 0.00081 0.62 10.7 0.0 21 46 667 692 659 699 0.85 9 15 2.5 1.9e+03 -0.4 0.1 21 48 695 722 692 728 0.74 10 15 2.7 2.1e+03 -0.5 0.1 21 45 723 747 704 758 0.80 11 15 3.7 2.9e+03 -1.0 0.0 21 44 764 787 747 791 0.70 12 15 0.81 6.2e+02 1.1 0.0 21 48 819 845 807 850 0.83 13 15 0.0098 7.5 7.3 0.1 21 52 847 878 845 880 0.88 14 15 1.5 1.2e+03 0.3 0.1 21 31 875 885 871 900 0.83 15 15 0.32 2.4e+02 2.4 0.1 21 43 903 925 892 930 0.79
Sequence Information
- Coding Sequence
- ATGTTAATGGCGTGTGCTTCAGTTCAGGCATCTGAAGGAGACGGTTTACCCAGTAAAATGTGTTTCTCTTGCATTGCACAAATGAATcaagcattttctttcaaaagaCAGTGTGAAGAAGCTGACGCAAATTTTCGTTTGTACCTTTTCAATCGCATATCTAGCGAACAGAAAAAATCTGACACTGACGAAATAAAGAAAGAAATTAAGGTGGAAGAGCTGCAATTAAATGAGACTGGTGATGAAAATATAGTTGAATATGACAATCCCttagatttatataaaatgAGTCCAAATGAAAATAATTCAGATAATCAAGAAAAGGAAGGAATCGTACAAATAGCGaaacttaaaaaagacagaaaaacACAACGCAAAAAAACGaacataatgaaaaaaaataacaacgaaTGTCAAAATTGCAATCTTCAGTTTGATACACGAGCTGAATATCTAGATcacgtaaaaaacaaaaaacatcaaCGACGATTACATCCTTGTAGcatatgcaataaaaaatttacaggTTTTCGTCTTAAAGAACACATGAGAATACACACTCAGGAAAAACCTTTTACATGCAACATTTGTGGTGTAAAATTCAGCCTTGCTGGTAATTTGACACGACATATGAAGATACATACCGGGGAACGTCCTCGTAAGTGTCATGTTTGTGGTAAAGGGTTCATTCGATCGACAACCCTTGTTGAACATCTCAGAACACATACTGGGGAGAAACCGTTCGTTTGCAGTACTTGCGGGAAGAAATTCACACAATCAAGCCAGTTGTCAAATCACCTAAGGAAGCATGATTTAAAAGGTGATGATAATAAACATGTTAAACTAAAACGGAATGACCCGAAGCCAACTTGCAAGATATGTGGTAAATTGTTTTCAACTAATGCCACAATGAAAACACATATGTTAATACATGGCCCGAAGAAGTTTTTATGCAGTAATTGCGGAAGAGGTTTTTCTAGCCAGCCAGGCTTGCAGTCTCATATGAAACtacatacaggtgagaaaccatatccgTGCCAAACTTGCGGGAAATTATTTAGACAAATAAGCGGTTTAAAATCACATCAATTAATCCATACGGGAGAAAAACCGCACGTTTGTAAAATATGCGATAAGTCTTTTACCCAGAGCAACCACTTGAAGTATCATGTTCGTATACATAATGGGGAGAAGCCCCACACCTGTTCTGTTTGCAATAAAAGTTTTACACTGAACGGAACTTTGACGGTTCATATGAGAACACACACGGGAGAGACCCCCTATTTGTGTCCGGTTTGCGGAAAAGGATTTTATGATTCTAGCAGAGAAttgcaacacatttttattactaGAATAGAAGATAACCGTTTAACATTATCGGAAATGCTAGAGGCGTGTGCTTCAGTTCAGgtatcTGAAGGAGACGGTTTACCCAGTAAAATGTGTTTCTCCTGCATTGAACAAATGAATcaagcattttctttcaaaagaCGTTGTGAAGAATCTGATGCAAACCTTCGTTTGTACCTTTTCAATGGAATATCAAGCGAacagaaaaaatcatacactgTAGAAAACAAGATGGAGGATATCCACTTAGAAGAATTAAATGATATCGGCGACGGAAATATAATCGAATATGGCAGTCCTTTAGATTTAAATGATATGGTATCGAAGGAACAGGAAAAATCTGACAATGACGTAATAAAGAAAGAAATCAAGGTGGAAGAGCTGCAATTAAATGAGACTGGTGATGAAAATATAGTCGAATATGACAATCCCttagatttatataaaatgtttccAAATGAAAATAATTCAGATAATCAAGAAAAGGATGGCATCGTACAAATAGCGAAagttaaaaaagacagaaaaacACGAGCTGAATATCTAGATCACGTAAAAAACAAACATCAACGACGATTACATCCTTGTAGcatatgcaataaaaaatttacaagtttTCGTCTTAAAGAACACATGAGAATACACACTCAGGAAAAACCTTTTACATGCAACATTTGTGGTGTCAAATTCAGACTTGTTGGTAATTTGACACGACATATGATGATCCATACCGGGGAACGTCCACATAAGTGTCATATTTGCGATAAAGCGTTCAATCGACCGGCAACGCTTGCTGATCATGTGAGAATACATACTGGGGAGAAACCGTTCGTTTGCAGTACTTGCGGGAAGAAATTCGCACAAAAATGCAAGTTGTCAAATCACCTAAGAAAGCATGATTTGAAAGGTGGTGATAATAAACCTGTTAAACTAAAGCCGAATGACCCGAAGCCAACTTGCAAGATATGTGGTAAATTGTTTTCAACTAACGCTACAATGAAAAAGCATATGTTAATACATGGCCCGAAGAAGTTTTTATGCAGTAATTGCGGAAGAGGTTTTTCAAACCAGCCAGGCTTGCAGTCTCATATGAAAGTACATacgggtgagaaaccatatccgTGCCAAACTTGCGGgaaattatttagaaaaataagcGGTTTGAGAACACATGAATTAATCCATACGGGAGAAAAACCGCACGTTTGTAAAATATGCGATAAGTCTTTTACCCAGAGCAACACTTTGAAGTATCATGTTCGTATACATAATGGGGAGAAGCCCTACACCTGTTCTGTTTGCAATAAAAGTTTTACACTGAACGGAACTTTGACCGTTCATATGAGAACACACACGAGAGAGACCCCCTATTTTTGTCCGATTTGCGGAAAAGGGTTTTATCATTCTGGCAGTATGAAAAAACATtgtataaaacataaaattgaggacaatcttaaaataaaatgtgataaatcgtaa
- Protein Sequence
- MLMACASVQASEGDGLPSKMCFSCIAQMNQAFSFKRQCEEADANFRLYLFNRISSEQKKSDTDEIKKEIKVEELQLNETGDENIVEYDNPLDLYKMSPNENNSDNQEKEGIVQIAKLKKDRKTQRKKTNIMKKNNNECQNCNLQFDTRAEYLDHVKNKKHQRRLHPCSICNKKFTGFRLKEHMRIHTQEKPFTCNICGVKFSLAGNLTRHMKIHTGERPRKCHVCGKGFIRSTTLVEHLRTHTGEKPFVCSTCGKKFTQSSQLSNHLRKHDLKGDDNKHVKLKRNDPKPTCKICGKLFSTNATMKTHMLIHGPKKFLCSNCGRGFSSQPGLQSHMKLHTGEKPYPCQTCGKLFRQISGLKSHQLIHTGEKPHVCKICDKSFTQSNHLKYHVRIHNGEKPHTCSVCNKSFTLNGTLTVHMRTHTGETPYLCPVCGKGFYDSSRELQHIFITRIEDNRLTLSEMLEACASVQVSEGDGLPSKMCFSCIEQMNQAFSFKRRCEESDANLRLYLFNGISSEQKKSYTVENKMEDIHLEELNDIGDGNIIEYGSPLDLNDMVSKEQEKSDNDVIKKEIKVEELQLNETGDENIVEYDNPLDLYKMFPNENNSDNQEKDGIVQIAKVKKDRKTRAEYLDHVKNKHQRRLHPCSICNKKFTSFRLKEHMRIHTQEKPFTCNICGVKFRLVGNLTRHMMIHTGERPHKCHICDKAFNRPATLADHVRIHTGEKPFVCSTCGKKFAQKCKLSNHLRKHDLKGGDNKPVKLKPNDPKPTCKICGKLFSTNATMKKHMLIHGPKKFLCSNCGRGFSNQPGLQSHMKVHTGEKPYPCQTCGKLFRKISGLRTHELIHTGEKPHVCKICDKSFTQSNTLKYHVRIHNGEKPYTCSVCNKSFTLNGTLTVHMRTHTRETPYFCPICGKGFYHSGSMKKHCIKHKIEDNLKIKCDKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530491;
- 90% Identity
- iTF_01530491;
- 80% Identity
- iTF_01530491;