Xxan020537.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:6883583-6885895[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.017 13 6.5 0.5 22 43 289 310 283 315 0.88 2 9 0.058 45 4.8 0.2 21 43 316 338 310 344 0.89 3 9 0.00078 0.6 10.8 0.0 21 51 344 374 341 375 0.85 4 9 0.004 3.1 8.5 0.2 22 48 373 398 370 400 0.88 5 9 0.005 3.8 8.2 0.1 21 46 400 424 395 430 0.86 6 9 0.59 4.5e+02 1.6 0.2 27 48 434 454 428 459 0.84 7 9 0.097 74 4.1 0.0 20 44 455 479 448 487 0.83 8 9 0.1 80 4.0 0.2 22 48 485 510 482 515 0.85 9 9 0.21 1.6e+02 3.0 0.7 25 48 516 538 509 541 0.80
Sequence Information
- Coding Sequence
- atgaAACAGTTAAAAGTAATTGGCTGTGGTTTATCACAAATGTGCAGATTATGTCTGTCACACGATAAAATCATTACAACGGGCGTATTTCTGTTTTCCTGTCAATCGGGAAACGATACAGCCGATATGGTAATGGAATGTGCTCCAGTTcatATTACCAAAGAGGACAAGATGCCGACCTATATTTGTCGATCATGCTTCAATCAACTGAAGAAATTTCACCAGTTCCAAAAGCAAATAATACAGTCTGACAAAACATTGCAGCGCTATCTACAGCAGTTGAGCGATTATCCTACTCAAGTCAAGGTTGAATGGGCTCTCGAAGAACCATCTGATGCTTCCGTAAGCCAGACCTCTAATACTGACGCCAATACACGGTGTGAACCCTTTGAAATTATGGGTGATGGGTTTGATATTTGTCGTTCAGATCAGAATGTACCTGCCAATGTTAGCGCCGCAAATAATGATAGCGAAGATATATATttcaaatctgaaaaaaaagcTGAAGTAATGGATGTCAATTCATTAATGAAAACCGAGTGTGCTGACGACGCAGTAGAAAATGTATATGAGAATGATGGTAGTGAAATTAGTTTCGAAGGCTCTATGATAGACATTGGCGAAACAAAAATAGGTATTAATACTTCCGAGGTCTTCGAGTATCCCGTTCAATTTGAAAATAGTATGTCGAATAAAATACAGCTGAAATCGGAAGAAACATACAATACACCGCTAGAAAGAGCCGATAGTAACCTGTTCCCTGAAAATGTTAAAGACGATGAATGTCTTCGTTCTAATGAAGATGTTATTATAACTgcaaatagaaataaatttcaaattgttaacaaaaAGATTTTTACTAATGAAAAATCccatcagtgtgacatttgtcagaGATGTTTTAAACTGTCAAGAAATTTAAAGAGTCATCGATTTATTCATACAGCAGAGacaccataccagtgtgacatttgtgaaTTGCGCCTCACTACTTTACAGAATTTAAAACgtcataaattaatacatacaggagagaaaccataccagtgtgacatttgtaaaatgtattttagacAATCGCAGGGTTTAAAATctcataaattaatacatacaaTGGAGAAACCCTACCTCTGTGTTATATGTAAAATGCGTTTCAGACACTCAAAGACCTTAAGAaaccataaattaaaacatgcaggagagaaaccataccgATGCGACATTTGTCAAATGCGTTTTAGACAAGCTggtaatttaaatattcataaactAAAACATACAGAAGGGAAGTCATACccgtgtgacatttgtaaattgTGTTTCAGTCATTCACAGAGTTTAAACAggcataaattaaaacatacagaagagaaaccataccaatgtgacatttgtaaaatgtattttggaAAATCGCAGAGCTTAAAAActcataaattaatacatacaggagagaaaccataccCGTGTGACacttgtaaaatgtgttttagtCATTCACAGAGTTTAAAAAggcataaattaaaacatacaggagagaaactataccagtgtgacatttgtcatgTGTGTTATAGCCGAAGCGATTATTTAAAacgtcataaattaaaacatacaggagagaaactataa
- Protein Sequence
- MKQLKVIGCGLSQMCRLCLSHDKIITTGVFLFSCQSGNDTADMVMECAPVHITKEDKMPTYICRSCFNQLKKFHQFQKQIIQSDKTLQRYLQQLSDYPTQVKVEWALEEPSDASVSQTSNTDANTRCEPFEIMGDGFDICRSDQNVPANVSAANNDSEDIYFKSEKKAEVMDVNSLMKTECADDAVENVYENDGSEISFEGSMIDIGETKIGINTSEVFEYPVQFENSMSNKIQLKSEETYNTPLERADSNLFPENVKDDECLRSNEDVIITANRNKFQIVNKKIFTNEKSHQCDICQRCFKLSRNLKSHRFIHTAETPYQCDICELRLTTLQNLKRHKLIHTGEKPYQCDICKMYFRQSQGLKSHKLIHTMEKPYLCVICKMRFRHSKTLRNHKLKHAGEKPYRCDICQMRFRQAGNLNIHKLKHTEGKSYPCDICKLCFSHSQSLNRHKLKHTEEKPYQCDICKMYFGKSQSLKTHKLIHTGEKPYPCDTCKMCFSHSQSLKRHKLKHTGEKLYQCDICHVCYSRSDYLKRHKLKHTGEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01531255;
- 90% Identity
- iTF_01531255;
- 80% Identity
- iTF_01531255;